(Q34786458)

4 August 2017

title

Spectral library generating function for assessing spectrum-spectrum match significance (English)

1 reference

4 August 2017

1

Mingxun Wang

1 reference

4 August 2017

2

Nuno Bandeira

1 reference

4 August 2017

publication date

31 July 2013

1 reference

Journal of Proteome Research

4 August 2017

published in

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4 August 2017

volume

12

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4 August 2017

issue

9

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4 August 2017

page(s)

3944-3951

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

4 August 2017

cites work

1 reference

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Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment

8 July 2018

1 reference

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Target-decoy approach and false discovery rate: when things may go wrong

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Spectrum-to-spectrum searching using a proteome-wide spectral library

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Peptide identification from mixture tandem mass spectra

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Spectral library searching for peptide identification via tandem MS.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Artificial decoy spectral libraries for false discovery rate estimation in spectral library searching in proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Directed sample interrogation utilizing an accurate mass exclusion-based data-dependent acquisition strategy (AMEx).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Protein identification by spectral networks analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Development and validation of a spectral library searching method for peptide identification from MS/MS.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Using annotated peptide mass spectrum libraries for protein identification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Mass spectrometry-based proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Error tolerant searching of uninterpreted tandem mass spectrometry data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Method to compare collision-induced dissociation spectra of peptides: potential for library searching and subtractive analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Proposal for a common nomenclature for sequence ions in mass spectra of peptides

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

Impact of ion trap tandem mass spectra variability on the identification of peptides.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766387

26 October 2018

Identifiers

DOI

10.1021/PR400230P

1 reference

4 August 2017

1 reference

4 August 2017

1 reference