Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q35057759)
Watch
English
In silico analysis of the binding of agonists and blockers to the β2-adrenergic receptor.
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
title
In silico analysis of the binding of agonists and blockers to the β2-adrenergic receptor
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
main subject
in silico
1 reference
based on heuristic
inferred from title
author
Barkin Berk
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
Stefano Costanzi
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
author name string
Santiago Vilar
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
Joel Karpiak
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
publication date
19 January 2011
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
published in
Journal of Molecular Graphics & Modelling
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
volume
29
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
issue
6
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
page(s)
809-817
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
cites work
Molecular Architecture of G Protein-Coupled Receptors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Modeling G Protein-Coupled Receptors: a Concrete Possibility
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Structure of a nanobody-stabilized active state of the β(2) adrenoceptor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Docking-based virtual screening for ligands of G protein-coupled receptors: not only crystal structures but also in silico models.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Structure of the Human Dopamine D3 Receptor in Complex with a D2/D3 Selective Antagonist
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Ligand-steered modeling and docking: A benchmarking study in class A G-protein-coupled receptors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Structure-based discovery of A2A adenosine receptor ligands
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Structure-based discovery of novel chemotypes for adenosine A(2A) receptor antagonists
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
GPCR 3D homology models for ligand screening: lessons learned from blind predictions of adenosine A2a receptor complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Ligand-specific regulation of the extracellular surface of a G-protein-coupled receptor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Rhodopsin and the others: a historical perspective on structural studies of G protein-coupled receptors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Ligand and structure-based models for the prediction of ligand-receptor affinities and virtual screenings: Development and application to the beta(2)-adrenergic receptor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
The structure and function of G-protein-coupled receptors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Analysis of full and partial agonists binding to beta2-adrenergic receptor suggests a role of transmembrane helix V in agonist-specific conformational changes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Structure-based discovery of beta2-adrenergic receptor ligands
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Identification of two distinct inactive conformations of the beta2-adrenergic receptor reconciles structural and biochemical observations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Helix movement is coupled to displacement of the second extracellular loop in rhodopsin activation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Identifying conformational changes of the beta(2) adrenoceptor that enable accurate prediction of ligand/receptor interactions and screening for GPCR modulators
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Discovery of new GPCR biology: one receptor structure at a time
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Dopamine D2 receptors form higher order oligomers at physiological expression levels
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
On the applicability of GPCR homology models to computer-aided drug discovery: a comparison between in silico and crystal structures of the beta2-adrenergic receptor.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Ligand-stabilized conformational states of human beta(2) adrenergic receptor: insight into G-protein-coupled receptor activation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
GPCR engineering yields high-resolution structural insights into beta2-adrenergic receptor function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
The evasive nature of drug efficacy: implications for drug discovery
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Conformational complexity of G-protein-coupled receptors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Bidirectional, iterative approach to the structural delineation of the functional "chemoprint" in GPR40 for agonist recognition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Novel procedure for modeling ligand/receptor induced fit effects.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Human P2Y(6) receptor: molecular modeling leads to the rational design of a novel agonist based on a unique conformational preference.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Crosstalk in G protein-coupled receptors: changes at the transmembrane homodimer interface determine activation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
GPCR interacting proteins (GIP).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Predicted 3D structure for the human beta 2 adrenergic receptor and its binding site for agonists and antagonists
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
The second extracellular loop of the dopamine D2 receptor lines the binding-site crevice
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Sequential binding of agonists to the beta2 adrenoceptor. Kinetic evidence for intermediate conformational states
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Seven-transmembrane receptors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Beta2 adrenergic receptor activation. Modulation of the proline kink in transmembrane 6 by a rotamer toggle switch
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Activation of the beta 2-adrenergic receptor involves disruption of an ionic lock between the cytoplasmic ends of transmembrane segments 3 and 6.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Involvement of Asn-293 in stereospecific agonist recognition and in activation of the beta 2-adrenergic receptor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
VMD: visual molecular dynamics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Glutamate residues in the second extracellular loop of the human A2a adenosine receptor are required for ligand recognition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Role of the second extracellular loop of adenosine receptors in agonist and antagonist binding. Analysis of chimeric A1/A3 adenosine receptors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
8 July 2018
Computational mapping of the conformational transitions in agonist selective pathways of a G-protein coupled receptor.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
25 October 2018
Selective structure-based virtual screening for full and partial agonists of the beta2 adrenergic receptor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
25 October 2018
Contacts between extracellular loop two and transmembrane helix six determine basal activity of the thyroid-stimulating hormone receptor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
25 October 2018
Coupling ligand structure to specific conformational switches in the beta2-adrenoceptor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
25 October 2018
TRAJELIX: a computational tool for the geometric characterization of protein helices during molecular dynamics simulations.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3119336
retrieved
25 October 2018
Identifiers
DOI
10.1016/J.JMGM.2011.01.005
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
PMCID
3119336
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
PubMed ID
21334234
1 reference
stated in
Europe PubMed Central
PMCID
3119336
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21334234%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
ResearchGate publication ID
49848496
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit