(Q35066465)

6 August 2017

title

Transcriptomic profiling of rat liver samples in a comprehensive study design by RNA-Seq (English)

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6 August 2017

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Danielle Thierry-Mieg

6

Danielle Thierry-Mieg

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Jean Thierry-Mieg

Jean Thierry-Mieg

5

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Weida Tong

9

Weida Tong

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6 August 2017

7

Leming Shi

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6 August 2017

4

Huixiao Hong

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6 August 2017

1

Binsheng Gong

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6 August 2017

Charles Wang

2

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6 August 2017

Zhenqiang Su

3

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6 August 2017

Scott S Auerbach

8

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6 August 2017

Joshua Xu

10

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6 August 2017

publication date

26 August 2014

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6 August 2017

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6 August 2017

volume

1

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6 August 2017

page(s)

140021

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Creative Commons Attribution 4.0 International

6 August 2017

copyright license

start time

26 August 2014

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

edgeR

edgeR

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

DESeq

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

limma

limma

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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https://scigraph.springernature.com/pub.10.1038/sdata.2014.21

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cites work

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

An integrated encyclopedia of DNA elements in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

Microarrays, deep sequencing and the true measure of the transcriptome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

Improving RNA-Seq expression estimates by correcting for fragment bias

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

Differential expression analysis for sequence count data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

TopHat: discovering splice junctions with RNA-Seq

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

RNA-Seq: a revolutionary tool for transcriptomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

Mapping and quantifying mammalian transcriptomes by RNA-Seq

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322565

The External RNA Controls Consortium: a progress report.

8 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSDATA.2014.21

21 January 2018

Identifiers

DOI

10.1038/SDATA.2014.21

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6 August 2017

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6 August 2017

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