(Q35088085)

6 August 2017

title

Transcriptional regulation via TF-modifying enzymes: an integrative model-based analysis (English)

1 reference

6 August 2017

Logan J Everett

1

1 reference

6 August 2017

Shane T Jensen

series ordinal

2

1 reference

6 August 2017

Sridhar Hannenhalli

series ordinal

3

1 reference

6 August 2017

language of work or name

English

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publication date

5 April 2011

1 reference

6 August 2017

published in

Nucleic Acids Research

1 reference

6 August 2017

volume

39

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6 August 2017

issue

12

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6 August 2017

page(s)

e78

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Creative Commons Attribution-NonCommercial 2.5 Generic

6 August 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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8 July 2018

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Mapping protein post-translational modifications with mass spectrometry

8 July 2018

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Cutting edge: selective tyrosine dephosphorylation of interferon-activated nuclear STAT5 by the VHR phosphatase

8 July 2018

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Inference of transcription modification in long-live yeast strains from their expression profiles

8 July 2018

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Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

8 July 2018

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Determining protein kinase substrate specificity by parallel solution-phase assay of large numbers of peptide substrates

8 July 2018

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Predictive modeling of genome-wide mRNA expression: from modules to molecules

8 July 2018

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Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

8 July 2018

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Interpreting the protein language using proteomics.

8 July 2018

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ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

8 July 2018

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Stats: multifaceted regulators of transcription

8 July 2018

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Global analysis of protein phosphorylation in yeast

8 July 2018

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Constructing transcriptional regulatory networks

8 July 2018

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Mechanisms of type-I- and type-II-interferon-mediated signalling

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Reverse engineering of regulatory networks in human B cells

8 July 2018

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B-lymphocytes, innate immunity, and autoimmunity

8 July 2018

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8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Role of protein methylation in regulation of transcription

8 July 2018

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8 July 2018

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Transcriptional regulatory code of a eukaryotic genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Long-term suppression of tumor growth by TNF requires a Stat1- and IFN regulatory factor 1-dependent IFN-gamma pathway but not IL-12 or IL-18.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

A 'molecular switchboard'--covalent modifications to proteins and their impact on transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Regulation of JAK-STAT signalling in the immune system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Transcriptional regulation of protein complexes and biological pathways

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

PAINT: A Promoter Analysis and Interaction Network Generation Tool for Gene Regulatory Network Identification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Summaries of Affymetrix GeneChip probe level data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Yeast glycogen synthase kinase-3 activates Msn2p-dependent transcription of stress responsive genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Regulating the regulators: lysine modifications make their mark

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Genome-wide coexpression dynamics: theory and application

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Multisite phosphorylation provides sophisticated regulation of transcription factors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

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8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Tyrosine phosphorylation of VHR phosphatase by ZAP-70

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Identification of a nuclear Stat1 protein tyrosine phosphatase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Convergence of the target of rapamycin and the Snf1 protein kinase pathways in the regulation of the subcellular localization of Msn2, a transcriptional activator of STRE (Stress Response Element)-regulated genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Signal Transduction and the Control of Gene Expression

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Negative regulation of Gcn4 and Msn2 transcription factors by Srb10 cyclin-dependent kinase

8 July 2018

1 reference

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8 July 2018

1 reference

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8 July 2018

1 reference

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8 July 2018

1 reference

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Genomic expression programs in the response of yeast cells to environmental changes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

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8 July 2018

1 reference

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8 July 2018

1 reference

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Acetylation of histones and transcription-related factors

8 July 2018

1 reference

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8 July 2018

1 reference

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8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

KEGG: Kyoto Encyclopedia of Genes and Genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Yeast PKA represses Msn2p/Msn4p-dependent gene expression to regulate growth, stress response and glycogen accumulation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Nuclear localization of the C2H2 zinc finger protein Msn2p is regulated by stress and protein kinase A activity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

STATs and gene regulation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Transcriptional activation by recruitment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

TRANSFAC: a database on transcription factors and their DNA binding sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Regulation of eukaryotic transcription factors by post-translational modification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

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8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

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27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Clustering of genes into regulons using integrated modeling-COGRIM.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130287

Identification of transcription factor binding sites in the human genome sequence

27 September 2018

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12 December 2020

A search in the genome of Saccharomyces cerevisiae for genes regulated via stress response elements

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12 December 2020

A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription

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12 December 2020

Hyperphosphorylation of Msn2p and Msn4p in response to heat shock and the diauxic shift is inhibited by cAMP in Saccharomyces cerevisiae

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKR172

1 reference

6 August 2017

1 reference

6 August 2017

1 reference