(Q35088733)

6 August 2017

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title

Thermodynamics of protein folding: a microscopic view (English)

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6 August 2017

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2

Martin Karplus

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6 August 2017

Themis Lazaridis

1

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6 August 2017

publication date

1 January 2003

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6 August 2017

published in

Biophysical Chemistry

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6 August 2017

volume

100

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6 August 2017

issue

1-3

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6 August 2017

page(s)

367-395

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Stereochemistry of Cooperative Effects in Haemoglobin: Haem–Haem Interaction and the Problem of Allostery

6 August 2017

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Experimental and Theoretical Aspects of Protein Folding

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Kinetics versus thermodynamics in protein folding

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Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin

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Solvent size vs cohesive energy as the origin of hydrophobicity

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7 January 2021

Solvation energy in protein folding and binding

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7 January 2021

Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides

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7 January 2021

Atomic solvation parameters applied to molecular dynamics of proteins in solution

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7 January 2021

An Efficient Mean Solvation Force Model for Use in Molecular Dynamics Simulations of Proteins in Aqueous Solution

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7 January 2021

Weak temperature dependence of the free energy surface and folding pathways of structured peptides

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7 January 2021

Excluded volume approximation to protein-solvent interaction. The solvent contact model

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7 January 2021

Contribution of hydration to protein folding thermodynamics. I. The enthalpy of hydration

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7 January 2021

Electrostatic interactions in macromolecules: theory and applications

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Semianalytical treatment of solvation for molecular mechanics and dynamics

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7 January 2021

Solution conformations and thermodynamics of structured peptides: molecular dynamics simulation with an implicit solvation model.

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7 January 2021

Discrimination of the native from misfolded protein models with an energy function including implicit solvation

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7 January 2021

Dynamics and unfolding pathways of a hyperthermophilic and a mesophilic rubredoxin

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7 January 2021

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An all atom force field for simulations of proteins and nucleic acids

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7 January 2021

Some factors in the interpretation of protein denaturation

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7 January 2021

Interior and surface of monomeric proteins

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7 January 2021

Denatured states of proteins

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7 January 2021

The denatured state (the other half of the folding equation) and its role in protein stability.

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7 January 2021

Circular dichroism of denatured barstar suggests residual structure,

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7 January 2021

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7 January 2021

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7 January 2021

Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: description of the folding pathway

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7 January 2021

Simulations of the structural and dynamical properties of denatured proteins: the "molten coil" state of bovine pancreatic trypsin inhibitor

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

Solid model compounds and the thermodynamics of protein unfolding

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7 January 2021

Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water

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7 January 2021

Heat capacity and conformation of proteins in the denatured state

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7 January 2021

The heat capacity of proteins

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7 January 2021

Heat capacity and compactness of denatured proteins

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7 January 2021

Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor

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7 January 2021

"New view" of protein folding reconciled with the old through multiple unfolding simulations.

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7 January 2021

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7 January 2021

Configurational entropy of native proteins

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7 January 2021

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7 January 2021

Decomposition of the Free Energy of a System in Terms of Specific Interactions

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7 January 2021

Additivity principles in biochemistry

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7 January 2021

Hidden thermodynamics of mutant proteins: a molecular dynamics analysis

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7 January 2021

Thermodynamics of protein-peptide interactions in the ribonuclease-S system studied by molecular dynamics and free energy calculations

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7 January 2021

The meaning of component analysis: decomposition of the free energy in terms of specific interactions.

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7 January 2021

Free energy simulations come of age: protein-ligand recognition

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7 January 2021

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7 January 2021

On the decomposition of free energies

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7 January 2021

Molecular recognition in proteins. Simulation analysis of substrate binding by a tyrosyl-tRNA synthetase mutant.

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7 January 2021

Use of binding energy in catalysis analyzed by mutagenesis of the tyrosyl-tRNA synthetase.

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7 January 2021

Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of Ile 3

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7 January 2021

Energetics of complementary side-chain packing in a protein hydrophobic core

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7 January 2021

Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease

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7 January 2021

Energetics of repacking a protein interior

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7 January 2021

Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect

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7 January 2021

The folding of an enzyme. II. Substructure of barnase and the contribution of different interactions to protein stability

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7 January 2021

Contribution of the hydrophobic effect to protein stability: analysis based on simulations of the Ile-96----Ala mutation in barnase

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7 January 2021

The role of packing interactions in stabilizing folded proteins

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7 January 2021

Estimation of the maximum change in stability of globular proteins upon mutation of a hydrophobic residue to another of smaller size

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7 January 2021

Aspects of protein energetics and dynamics

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7 January 2021

Hydrogen bonding stabilizes globular proteins

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7 January 2021

Contribution of hydrogen bonding to the conformational stability of ribonuclease T1

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7 January 2021

Thermodynamics of structural stability and cooperative folding behavior in proteins

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/S0301-4622(02)00293-4

Identifiers

DOI

10.1016/S0301-4622(02)00293-4

1 reference

release_pu7cpj7qdnhsxp6kpwwoz26tz4

6 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/pu7cpj7qdnhsxp6kpwwoz26tz4

24 November 2022

mapped directly with Wikidata item

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