(Q35182493)

7 August 2017

title

Molecular ecological tools to decipher the role of our microbial mass in obesity (English)

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7 August 2017

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H Smidt

3

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author name string

G D A Hermes

series ordinal

1

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7 August 2017

E G Zoetendal

series ordinal

2

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7 August 2017

publication date

1 March 2015

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7 August 2017

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7 August 2017

volume

6

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7 August 2017

issue

1

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7 August 2017

page(s)

61-81

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maintained by WikiProject

7 August 2017

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Comparative analysis of human gut microbiota by barcoded pyrosequencing

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Enterotypes of the human gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

The gut microbiota as an environmental factor that regulates fat storage

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

The distinction of metabolically 'healthy' from 'unhealthy' obese individuals

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Metatranscriptome analysis of the human fecal microbiota reveals subject-specific expression profiles, with genes encoding proteins involved in carbohydrate metabolism being dominantly expressed

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

High taxonomic level fingerprint of the human intestinal microbiota by ligase detection reaction--universal array approach

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Moving pictures of the human microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

DNA extraction method affects microbial community profiles from soils and sediment.

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Composition, variability, and temporal stability of the intestinal microbiota of the elderly

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Gut microbiota composition correlates with diet and health in the elderly

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Dietary intervention impact on gut microbial gene richness

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Human colonic microbiota associated with diet, obesity and weight loss

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Diversity of the human intestinal microbial flora

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

The long-term stability of the human gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Predicting a human gut microbiota's response to diet in gnotobiotic mice

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Differential adaptation of human gut microbiota to bariatric surgery-induced weight loss: links with metabolic and low-grade inflammation markers

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Opinion: Re-evaluating prokaryotic species

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Metagenomic analysis of the human distal gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Metatranscriptomic approach to analyze the functional human gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Effects of the gut microbiota on obesity and glucose homeostasis

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Metagenomics: application of genomics to uncultured microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Evaluation of three different forward primers by terminal restriction fragment length polymorphism analysis for determination of fecal bifidobacterium spp. in healthy subjects

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

High-fat diet determines the composition of the murine gut microbiome independently of obesity

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

A framework for human microbiome research

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Structure, function and diversity of the healthy human microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Bile acid is a host factor that regulates the composition of the cecal microbiota in rats.

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Evaluation of 16S rDNA-based community profiling for human microbiome research

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Metaproteomics of our microbiome - developing insight in function and activity in man and model systems

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Experimental and analytical tools for studying the human microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Using QIIME to analyze 16S rRNA gene sequences from microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Richness of human gut microbiome correlates with metabolic markers

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Obesity and the human microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Obesity alters gut microbial ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Microbial ecology: human gut microbes associated with obesity

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

How do shotgun proteomics algorithms identify proteins?

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models.

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

A catalog of reference genomes from the human microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Systems biology: Metabonomics

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Application of phylogenetic microarrays to interrogation of human microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

High-throughput quantitative analysis of the human intestinal microbiota with a phylogenetic microarray

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

A human gut microbial gene catalogue established by metagenomic sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

A metagenome-wide association study of gut microbiota in type 2 diabetes

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Removing noise from pyrosequenced amplicons

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Molecular eco-systems biology: towards an understanding of community function

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Responses of gut microbiota to diet composition and weight loss in lean and obese mice

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Accuracy of body mass index in diagnosing obesity in the adult general population

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

An iterative workflow for mining the human intestinal metaproteome

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Impact of diet on human intestinal microbiota and health.

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Gastrointestinal microbiota in irritable bowel syndrome: present state and perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Environmental proteomics: analysis of structure and function of microbial communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Microbiota and SCFA in lean and overweight healthy subjects

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Metagenomic analyses: past and future trends

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Intestinal microbiota in functional bowel disorders: a Rome foundation report

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Microbiota conservation and BMI signatures in adult monozygotic twins

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

An invitation to the marriage of metagenomics and metabolomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

A core gut microbiome in obese and lean twins

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

An obesity-associated gut microbiome with increased capacity for energy harvest

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Community structure and metabolism through reconstruction of microbial genomes from the environment

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Duodenal infusion of donor feces for recurrent Clostridium difficile

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Experimental models of the gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Human intestinal microbiota composition is associated with local and systemic inflammation in obesity

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Metaproteomics: studying functional gene expression in microbial ecosystems

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Linking long-term dietary patterns with gut microbial enterotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Human gut microbiota in obesity and after gastric bypass

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

BIPES, a cost-effective high-throughput method for assessing microbial diversity.

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Isolation of DNA from bacterial samples of the human gastrointestinal tract.

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota.

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome.

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

The 'rare biosphere': a reality check

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

Shotgun metaproteomics of the human distal gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.3920%2FBM2014.0016

21 January 2018

Identifiers

DOI

10.3920/BM2014.0016

1 reference

7 August 2017

1 reference