(Q35467271)

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Applying species-tree analyses to deep phylogenetic histories: challenges and potential suggested from a survey of empirical phylogenetic studies

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scholarly article

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Europe PubMed Central

PubMed publication ID

8 August 2017

Applying species-tree analyses to deep phylogenetic histories: challenges and potential suggested from a survey of empirical phylogenetic studies (English)

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Europe PubMed Central

PubMed publication ID

8 August 2017

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2

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L Lacey Knowles

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Europe PubMed Central

PubMed publication ID

8 August 2017

author name string

Hayley C Lanier

1

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Europe PubMed Central

PubMed publication ID

8 August 2017

publication date

4 November 2014

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Europe PubMed Central

PubMed publication ID

8 August 2017

number of pages

9

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Molecular Phylogenetics and Evolution

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Europe PubMed Central

PubMed publication ID

8 August 2017

83

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Europe PubMed Central

PubMed publication ID

8 August 2017

191-199

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Europe PubMed Central

PubMed publication ID

8 August 2017

A new look at the statistical model identification

1 reference

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7 January 2021

Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers

1 reference

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7 January 2021

Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.

1 reference

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7 January 2021

GENE TREE DISTRIBUTIONS UNDER THE COALESCENT PROCESS

1 reference

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Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

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Global phylogenetic structure of the hyperdiverse ant genus Pheidole reveals the repeated evolution of macroecological patterns

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Is a new and general theory of molecular systematics emerging?

1 reference

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A phylogenomic study of birds reveals their evolutionary history

1 reference

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TimeTree: a public knowledge-base of divergence times among organisms

1 reference

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Bayesian inference of species trees from multilocus data

1 reference

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7 January 2021

Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods

1 reference

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7 January 2021

Do estimated and actual species phylogenies match? Evaluation of East African cichlid radiations

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Generating samples under a Wright-Fisher neutral model of genetic variation

1 reference

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MRBAYES: Bayesian inference of phylogenetic trees

1 reference

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7 January 2021

A fossil-calibrated relaxed clock forEphedraindicates an Oligocene age for the divergence of Asian and New World clades and Miocene dispersal into South America

1 reference

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Resolving an ancient, rapid radiation in Saxifragales

1 reference

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Full modeling versus summarizing gene-tree uncertainty: method choice and species-tree accuracy

1 reference

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Is recombination a problem for species-tree analyses?

1 reference

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How low can you go? The effects of mutation rate on the accuracy of species-tree estimation

1 reference

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7 January 2021

The accuracy of species tree estimation under simulation: a comparison of methods

1 reference

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7 January 2021

Estimating species phylogenies using coalescence times among sequences.

1 reference

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7 January 2021

Gene Trees in Species Trees

1 reference

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7 January 2021

Inferring phylogeny despite incomplete lineage sorting

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.10.022

7 January 2021

Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design

1 reference

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7 January 2021

Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays.

1 reference

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7 January 2021

Resolving difficult phylogenetic questions: why more sequences are not enough

1 reference

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Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation.

1 reference

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Major evolutionary transitions in ant agriculture

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Phylogenetic relationships and the evolution of regulatory gene sequences in the parrotfishes

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An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants

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Placental mammal diversification and the Cretaceous-Tertiary boundary

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The adequacy of morphology for reconstructing the early history of placental mammals

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Species tree inference by minimizing deep coalescences

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A supermatrix-based molecular phylogeny of the family Drosophilidae

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Deciphering ancient rapid radiations

1 reference

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Branch lengths, support, and congruence: testing the phylogenomic approach with 20 nuclear loci in snakes

1 reference

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Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood.

1 reference

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7 January 2021

Identifiers

10.1016/J.YMPEV.2014.10.022

1 reference

Europe PubMed Central

PubMed publication ID

8 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

8 August 2017

ResearchGate publication ID

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