(Q35528859)

8 August 2017

title

The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola (English)

1 reference

Mycosphaerella graminicola

8 August 2017

1 reference

object named as

Mycosphaerella graminicola

1 reference

3

Richard C Hamelin

0 references

Stephen B Goodwin

object named as

Stephen B Goodwin

series ordinal

4

0 references

author name string

Braham Dhillon

series ordinal

1

1 reference

8 August 2017

Navdeep Gill

series ordinal

2

1 reference

8 August 2017

language of work or name

English

0 references

publication date

17 December 2014

1 reference

8 August 2017

1 reference

8 August 2017

volume

15

1 reference

8 August 2017

page(s)

1132

1 reference

Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci

8 August 2017

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Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi

12 July 2018

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The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry

12 July 2018

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Abundant degenerate miniature inverted-repeat transposable elements in genomes of epichloid fungal endophytes of grasses

12 July 2018

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Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis

12 July 2018

1 reference

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Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

12 July 2018

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Accidental amplification and inactivation of a methyltransferase gene eliminates cytosine methylation in Mycosphaerella graminicola

12 July 2018

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Mycosphaerella graminicola: latent infection, crop devastation and genomics

12 July 2018

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Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

12 July 2018

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

12 July 2018

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Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome

12 July 2018

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Coevolution between a family of parasite virulence effectors and a class of LINE-1 retrotransposons

12 July 2018

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Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

12 July 2018

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The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion

12 July 2018

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Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences

12 July 2018

1 reference

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Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola

12 July 2018

1 reference

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A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes

12 July 2018

1 reference

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Retroelements (LINEs and SINEs) in vole genomes: differential distribution in the constitutive heterochromatin.

12 July 2018

1 reference

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A unified classification system for eukaryotic transposable elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Clustal W and Clustal X version 2.0

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Telomere-associated endonuclease-deficient Penelope-like retroelements in diverse eukaryotes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Genomic organization of the Drosophila telomere retrotransposable elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Telomere-specific non-LTR retrotransposons and telomere maintenance in the silkworm, Bombyx mori

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

De novo identification of repeat families in large genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

The genome sequence of the rice blast fungus Magnaporthe grisea

12 July 2018

1 reference

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The origin and behavior of mutable loci in maize

12 July 2018

1 reference

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RIP: the evolutionary cost of genome defense

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Mobile elements: drivers of genome evolution

12 July 2018

1 reference

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The Jalview Java alignment editor

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Evolution and organization of a highly dynamic, subtelomeric helicase gene family in the rice blast fungus Magnaporthe grisea

12 July 2018

1 reference

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Automated de novo identification of repeat sequence families in sequenced genomes

12 July 2018

1 reference

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Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Three retrotransposon families in the genome of Giardia lamblia: two telomeric, one dead

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Targeting of the yeast Ty5 retrotransposon to silent chromatin is mediated by interactions between integrase and Sir4p

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Artemis: sequence visualization and annotation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Repbase update: a database and an electronic journal of repetitive elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

EMBOSS: the European Molecular Biology Open Software Suite

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

The Werner syndrome gene: the molecular basis of RecQ helicase-deficiency diseases

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Action of repeat-induced point mutation on both strands of a duplex and on tandem duplications of various sizes in Neurospora

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Defending genome integrity during DNA replication: a proposed role for RecQ family helicases

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Tandem repeats finder: a program to analyze DNA sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Structure of the chromosome VII centromere region in Neurospora crassa: degenerate transposons and simple repeats

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Organization of chromosome ends in Ustilago maydis. RecQ-like helicase motifs at telomeric regions.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

High intrinsic rate of DNA loss in Drosophila

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Nested retrotransposons in the intergenic regions of the maize genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

The chromosome ends of Saccharomyces cerevisiae.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

An alternative pathway for yeast telomere maintenance rescues est1- senescence

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

The chromosome end in yeast: its mosaic nature and influence on recombinational dynamics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

DNA methylation associated with repeat-induced point mutation in Neurospora crassa

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Repeat-induced G-C to A-T mutations in Neurospora.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Basic local alignment search tool

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Recurrence of repeat-induced point mutation (RIP) in Neurospora crassa

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Distribution and phylogeny of Penelope-like elements in eukaryotes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

TRAP: automated classification, quantification and annotation of tandemly repeated sequences.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Pack-MULE transposable elements mediate gene evolution in plants

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Cryptons: a group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungi

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Effect of the DNA topoisomerase II inhibitor VP-16 on illegitimate recombination in yeast chromosomes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Posttranscriptional gene silencing in Neurospora by a RecQ DNA helicase

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4522978

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-15-1132

Estimation of nucleotide substitution rates in Eurotiomycete fungi

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25519841

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genome organization in Fusarium oxysporum: clusters of class II transposons

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25519841

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SINEs and LINEs cluster in distinct DNA fragments of Giemsa band size

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25519841

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-15-1132

1 reference

8 August 2017

1 reference

8 August 2017

1 reference