(Q35668006)

9 August 2017

title

Comprehensive transcriptome analysis of the periodontopathogenic bacterium Porphyromonas gingivalis W83. (English)

1 reference

9 August 2017

main subject

Porphyromonas gingivalis

0 references

transcriptome

0 references

author name string

Hedda Høvik

1

1 reference

9 August 2017

Wen-Han Yu

2

1 reference

9 August 2017

Ingar Olsen

3

1 reference

9 August 2017

Tsute Chen

4

1 reference

9 August 2017

language of work or name

English

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publication date

28 October 2011

1 reference

9 August 2017

published in

Journal of Bacteriology

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9 August 2017

volume

194

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9 August 2017

issue

1

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9 August 2017

page(s)

100-114

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Strand-specific transcriptome profiling with directly labeled RNA on genomic tiling microarrays

9 August 2017

cites work

1 reference

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12 July 2018

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Hemagglutinin/Adhesin domains of Porphyromonas gingivalis play key roles in coaggregation with Treponema denticola

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12 July 2018

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Involvement of extracytoplasmic function sigma factors in virulence regulation in Porphyromonas gingivalis W83

12 July 2018

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12 July 2018

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Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions

12 July 2018

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12 July 2018

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Putative respiratory chain of Porphyromonas gingivalis

12 July 2018

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12 July 2018

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Transcriptome analysis of Pseudomonas syringae identifies new genes, noncoding RNAs, and antisense activity

12 July 2018

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

12 July 2018

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Operon structure of Staphylococcus aureus

12 July 2018

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Dynamic probe selection for studying microbial transcriptome with high-density genomic tiling microarrays

12 July 2018

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Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability.

12 July 2018

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A single-base resolution map of an archaeal transcriptome

12 July 2018

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Pathway analysis for intracellular Porphyromonas gingivalis using a strain ATCC 33277 specific database

12 July 2018

1 reference

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Adaptation of Porphyromonas gingivalis to microaerophilic conditions involves increased consumption of formate and reduced utilization of lactate

12 July 2018

1 reference

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The transcriptionally active regions in the genome of Bacillus subtilis

12 July 2018

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PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds

12 July 2018

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Prevalence of transcription promoters within archaeal operons and coding sequences.

12 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Proteomics of Porphyromonas gingivalis within a model oral microbial community

12 July 2018

1 reference

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The Listeria transcriptional landscape from saprophytism to virulence.

12 July 2018

1 reference

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The gingipains: scissors and glue of the periodontal pathogen, Porphyromonas gingivalis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Periodontitis in systemic rheumatic diseases

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Structure and complexity of a bacterial transcriptome.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Regulatory RNAs in bacteria

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Comparative transcriptomic analysis of Porphyromonas gingivalis biofilm and planktonic cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Analysis of a band 7/MEC-2 family gene of Porphyromonas gingivalis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

DOOR: a database for prokaryotic operons

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Rfam: updates to the RNA families database

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Association between periodontitis in pregnancy and preterm or low birth weight: Review of the literature.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Porphyromonas gingivalis htrA is involved in cellular invasion and in vivo survival

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Small non-coding RNAs in Caulobacter crescentus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Regulatory mechanisms employed by cis-encoded antisense RNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Small noncoding RNAs controlling pathogenesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Small RNAs controlling outer membrane porins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

A high-resolution map of transcription in the yeast genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

The role of RNAs in the regulation of virulence-gene expression.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Effect of RyhB small RNA on global iron use in Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Periodontal microbial ecology

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Gene expression in Porphyromonas gingivalis after contact with human epithelial cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

A novel method for accurate operon predictions in all sequenced prokaryotes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Light-directed 5'-->3' synthesis of complex oligonucleotide microarrays

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Gene expression analysis using oligonucleotide arrays produced by maskless photolithography

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Variance stabilization applied to microarray data calibration and to the quantification of differential expression

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Large-scale transcriptional activity in chromosomes 21 and 22

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Significance analysis of microarrays applied to the ionizing radiation response

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

A Porphyromonas gingivalis genetic locus encoding a heme transport system

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

The COG database: a tool for genome-scale analysis of protein functions and evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Genomic loci of the Porphyromonas gingivalis insertion element IS1126.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

A 55-kilodalton immunodominant antigen of Porphyromonas gingivalis W50 has arisen via horizontal gene transfer

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

The porphyromonas gingivalis prtP/kgp homologue exists as two open reading frames in strain 381.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Life below the gum line: pathogenic mechanisms of Porphyromonas gingivalis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

IS195, an insertion sequence-like element associated with protease genes in Porphyromonas gingivalis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Duplication and differential expression of hemagglutinin genes in Porphyromonas gingivalis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Interactions of Porphyromonas gingivalis with epithelial cells.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

The bcp gene in the bcp-recA-vimA-vimE-vimF operon is important in oxidative stress resistance in Porphyromonas gingivalis W83.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

RNAs: regulators of bacterial virulence

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Expression patterns of genes induced by oxidative stress in Porphyromonas gingivalis

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Transcriptional organization, regulation and role of the Porphyromonas gingivalis W83 hmu haemin-uptake locus

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Transcript mapping with high-density oligonucleotide tiling arrays

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Gene expression profile analysis of Porphyromonas gingivalis during invasion of human coronary artery endothelial cells

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Porphyromonas gingivalis, Bacteroides forsythus and other putative periodontal pathogens in subjects with and without periodontal destruction.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Subgingival microbiota of Brazilian subjects with untreated chronic periodontitis.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Transcriptome Complexity in a Genome-Reduced Bacterium

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Human Atherosclerotic Plaque Contains Viable Invasive Actinobacillus actinomycetemcomitans and Porphyromonas gingivalis

15 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256594

Inhibition of Porphyromonas gingivalis hemagglutinating activity by IgY against a truncated HagA

15 November 2018

1 reference

12 December 2020

Genetic analyses of proteolysis, hemoglobin binding, and hemagglutination of Porphyromonas gingivalis. Construction of mutants with a combination of rgpA, rgpB, kgp, and hagA

1 reference

12 December 2020

Detection of Porphyromonas gingivalis DNA in aortic tissue by PCR

1 reference

12 December 2020

Quantitative detection of periodontopathic bacteria in atherosclerotic plaques from coronary arteries

1 reference

12 December 2020

Development of a simple chemically defined medium for Porphyromonas gingivalis: requirement for alpha-ketoglutarate

1 reference

12 December 2020

Dicing defence in bacteria

1 reference

12 December 2020

Occurrence of Porphyromonas gingivalis and Tannerella forsythensis in periodontally diseased and healthy subjects

1 reference

12 December 2020

Identifiers

DOI

10.1128/JB.06385-11

1 reference

release_4xe2x3ojknh2rb6xcedqnjrrsy

9 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/4xe2x3ojknh2rb6xcedqnjrrsy

24 November 2022

mapped directly with Wikidata item

PMC publication ID

3256594

1 reference

9 August 2017

1 reference