(Q35799405)

10 August 2017

lncRScan-SVM: A Tool for Predicting Long Non-Coding RNAs Using Support Vector Machine (English)

1 reference

10 August 2017

support vector machine

1 reference

Jia Meng

4

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author name string

Lei Sun

series ordinal

1

1 reference

10 August 2017

Hui Liu

series ordinal

2

1 reference

10 August 2017

Lin Zhang

series ordinal

3

1 reference

10 August 2017

language of work or name

English

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publication date

5 October 2015

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10 August 2017

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10 August 2017

10

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10 August 2017

10

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10 August 2017

e0139654

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Creative Commons Attribution 4.0 International

10 August 2017

start time

5 October 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

support vector machine

1 reference

based on heuristic

inferred from title

cites work

Genome-wide analysis of the human p53 transcriptional network unveils a lncRNA tumour suppressor signature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

eulerAPE: drawing area-proportional 3-Venn diagrams using ellipses

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Prediction and classification of ncRNAs using structural information

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

NONCODEv4: exploring the world of long non-coding RNA genes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

lincRNAs: genomics, evolution, and mechanisms

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

GENCODE: the reference human genome annotation for The ENCODE Project

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

pROC: an open-source package for R and S+ to analyze and compare ROC curves

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

lncRNAdb: a reference database for long noncoding RNAs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Biopython: freely available Python tools for computational molecular biology and bioinformatics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Differentiating protein-coding and noncoding RNA: challenges and ambiguities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Distinguishing protein-coding and noncoding genes in the human genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Distinguishing protein-coding from non-coding RNAs through support vector machines

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

The transcriptional landscape of the mammalian genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Global identification of human transcribed sequences with genome tiling arrays

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593643

10.1371/JOURNAL.PONE.0139654

11 July 2018

Identifiers

DOI

1 reference

10 August 2017

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1 reference

10 August 2017

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