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lincRNAs: genomics, evolution, and mechanisms
scientific article published on July 2013
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scholarly article
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stated in
Europe PubMed Central
PMCID
3924787
retrieved
21 August 2017
title
lincRNAs: genomics, evolution, and mechanisms
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3924787
retrieved
21 August 2017
main subject
genomics
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based on heuristic
inferred from title
author
Igor Ulitsky
object named as
Igor Ulitsky
series ordinal
1
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David P. Bartel
series ordinal
2
object named as
David P Bartel
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stated in
Europe PubMed Central
PMCID
3924787
retrieved
21 August 2017
language of work or name
English
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publication date
1 July 2013
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stated in
Europe PubMed Central
PMCID
3924787
retrieved
21 August 2017
published in
Cell
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stated in
Europe PubMed Central
PMCID
3924787
retrieved
21 August 2017
volume
154
1 reference
stated in
Europe PubMed Central
PMCID
3924787
retrieved
21 August 2017
page(s)
26-46
1 reference
stated in
Europe PubMed Central
PMCID
3924787
retrieved
21 August 2017
issue
1
1 reference
stated in
Europe PubMed Central
PMCID
3924787
retrieved
21 August 2017
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Highly ordered spatial organization of the structural long noncoding NEAT1 RNAs within paraspeckle nuclear bodies
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23 August 2017
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
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23 August 2017
Upstream open reading frames: molecular switches in (patho)physiology
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23 August 2017
Mammalian microRNAs predominantly act to decrease target mRNA levels
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23 August 2017
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
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23 August 2017
TERRA biogenesis, turnover and implications for function.
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23 August 2017
Long noncoding RNA as modular scaffold of histone modification complexes
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23 August 2017
Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays
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23 August 2017
Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA
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23 August 2017
Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a
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23 August 2017
Most "dark matter" transcripts are associated with known genes
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23 August 2017
A large fraction of extragenic RNA pol II transcription sites overlap enhancers
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23 August 2017
The long noncoding RNA RNCR2 directs mouse retinal cell specification
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23 August 2017
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
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23 August 2017
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
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23 August 2017
Widespread transcription at neuronal activity-regulated enhancers
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23 August 2017
Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor
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23 August 2017
2-D structure of the A region of Xist RNA and its implication for PRC2 association
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
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23 August 2017
De novo prediction of structured RNAs from genomic sequences
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23 August 2017
Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness
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23 August 2017
Assessing the genomic evidence for conserved transcribed pseudogenes under selection
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23 August 2017
Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain
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23 August 2017
Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
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23 August 2017
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
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23 August 2017
Lineage-specific biology revealed by a finished genome assembly of the mouse
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23 August 2017
Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
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23 August 2017
Evolution and functions of long noncoding RNAs
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23 August 2017
An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles
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PubMed Central
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23 August 2017
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
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23 August 2017
MicroRNAs: target recognition and regulatory functions
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
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23 August 2017
Patterns of exon-intron architecture variation of genes in eukaryotic genomes
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23 August 2017
Small RNAs in transcriptional gene silencing and genome defence
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23 August 2017
MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
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23 August 2017
Differentiating protein-coding and noncoding RNA: challenges and ambiguities
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23 August 2017
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
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23 August 2017
Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
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23 August 2017
A dual origin of the Xist gene from a protein-coding gene and a set of transposable elements
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23 August 2017
Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription
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23 August 2017
De novo origination of a new protein-coding gene in Saccharomyces cerevisiae
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23 August 2017
Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
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23 August 2017
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
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23 August 2017
Specific expression of long noncoding RNAs in the mouse brain
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23 August 2017
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide
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23 August 2017
Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes
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23 August 2017
MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells
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23 August 2017
Target mimicry provides a new mechanism for regulation of microRNA activity
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23 August 2017
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.
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23 August 2017
The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons.
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23 August 2017
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
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23 August 2017
Peptides encoded by short ORFs control development and define a new eukaryotic gene family
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23 August 2017
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
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23 August 2017
Transcriptional noise and the fidelity of initiation by RNA polymerase II.
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23 August 2017
A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains
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23 August 2017
Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction
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23 August 2017
The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene
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23 August 2017
Recruitment of PRC1 function at the initiation of X inactivation independent of PRC2 and silencing
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23 August 2017
High guanine and cytosine content increases mRNA levels in mammalian cells
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23 August 2017
Distinguishing protein-coding from non-coding RNAs through support vector machines
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23 August 2017
CAGE: cap analysis of gene expression
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23 August 2017
Evidence for conservation and selection of upstream open reading frames suggests probable encoding of bioactive peptides
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23 August 2017
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
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23 August 2017
A strategy for probing the function of noncoding RNAs finds a repressor of NFAT
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
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23 August 2017
The transcriptional landscape of the mammalian genome
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
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23 August 2017
Potential structural role of non-coding and coding RNAs in the organization of the cytoskeleton at the vegetal cortex of Xenopus oocytes
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
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23 August 2017
Transcriptional interference--a crash course
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23 August 2017
Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster
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23 August 2017
Evolution and functional classification of vertebrate gene deserts
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23 August 2017
Global identification of human transcribed sequences with genome tiling arrays
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23 August 2017
Genomic analysis of mouse retinal development
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23 August 2017
MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer
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23 August 2017
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
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23 August 2017
The non-coding Air RNA is required for silencing autosomal imprinted genes
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23 August 2017
Noncoding RNA gene detection using comparative sequence analysis
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23 August 2017
Chromosomal silencing and localization are mediated by different domains of Xist RNA.
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23 August 2017
Computational identification of noncoding RNAs in E. coli by comparative genomics
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23 August 2017
PNA interference mapping demonstrates functional domains in the noncoding RNA Xist
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23 August 2017
Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence
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23 August 2017
CRITICA: coding region identification tool invoking comparative analysis
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23 August 2017
A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex
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23 August 2017
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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23 August 2017
Polyadenylylated nuclear RNA encoded by Kaposi sarcoma-associated herpesvirus
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23 August 2017
Requirement for Xist in X chromosome inactivation
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23 August 2017
Triplex DNA structures.
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
23 August 2017
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
23 August 2017
The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
23 August 2017
The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
23 August 2017
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
6 September 2017
Long noncoding RNAs with snoRNA ends
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
6 September 2017
Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
6 September 2017
Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
14 September 2017
Regulation and expression of a growth arrest-specific gene (gas5) during growth, differentiation, and development
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
14 September 2017
Conservation of a triple-helix-forming RNA stability element in noncoding and genomic RNAs of diverse viruses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
25 June 2018
Translation drives mRNA quality control
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
25 June 2018
Genome-wide computational identification and manual annotation of human long noncoding RNA genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
25 June 2018
Synthesis in vitro of a seven amino acid peptide encoded in the leader RNA of Rous sarcoma virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
25 June 2018
Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
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1 September 2018
First exon length controls active chromatin signatures and transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
1 September 2018
Small peptides switch the transcriptional activity of Shavenbaby during Drosophila embryogenesis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
1 September 2018
Identification of protein interaction regions of VINC/NEAT1/Men epsilon RNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
1 September 2018
Molecular biology: RNA discrimination
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
5 November 2018
Identification of a Rapid Mammalian Deadenylation-Dependent Decay Pathway and Its Inhibition by a Viral RNA Element
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3924787
retrieved
3 December 2018
Compact and ordered collapse of randomly generated RNA sequences
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23827673
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Functional analysis of the highly conserved exon IV of XIST RNA
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23827673
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Mouse transcriptome: neutral evolution of 'non-coding' complementary DNAs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23827673
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.CELL.2013.06.020
1 reference
stated in
Europe PubMed Central
PMCID
3924787
retrieved
21 August 2017
PMCID
3924787
1 reference
stated in
Europe PubMed Central
PMCID
3924787
retrieved
21 August 2017
PubMed ID
23827673
1 reference
stated in
Europe PubMed Central
PMCID
3924787
retrieved
21 August 2017
ResearchGate publication ID
245537779
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