(Q35864733)

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After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection

scientific article published on 29 February 2012

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection (English)

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

Mycobacterium tuberculosis

0 references

Brigitte Gicquel

4

object named as

Brigitte Gicquel

0 references

author name string

Amine Namouchi

1

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

Xavier Didelot

2

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

Ulrike Schöck

3

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

Eduardo P C Rocha

5

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

publication date

29 February 2012

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Europe PubMed Central

PMC publication ID

10 August 2017

Genome Research

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Europe PubMed Central

PMC publication ID

10 August 2017

22

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

4

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

721-734

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

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Codon usage in the Mycobacterium tuberculosis complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

27 July 2018

High-efficiency gene inactivation and replacement system for gram-positive bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

27 July 2018

Pathogenesis of tuberculosis: pathway to apical localization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

27 July 2018

The evolutionary advantage of recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

27 July 2018

The hitch-hiking effect of a favourable gene

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

27 July 2018

https://pubmed.ncbi.nlm.nih.gov/22377718

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

27 July 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

27 July 2018

Restriction fragment length polymorphism analysis using IS6110 as an epidemiological marker in tuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

27 July 2018

Theoretical study of near neutrality. II. Effect of subdivided population structure with local extinction and recolonization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

27 July 2018

Linkage disequilibrium among multiple neutral alleles produced by mutation in finite population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

27 July 2018

Arms races between and within species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

27 July 2018

Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Causes and evolutionary significance of genetic convergence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Systematic genetic nomenclature for type VII secretion systems.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Circos: an information aesthetic for comparative genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

MapView: visualization of short reads alignment on a desktop computer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Co-infection with pansensitive and multidrug-resistant strains of Mycobacterium tuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

"Mycobacterium canettii" isolated from a human immunodeficiency virus-positive patient: first case recognized in the United States

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

The temporal dynamics of slightly deleterious mutations in Escherichia coli and Shigella spp.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Mapping short DNA sequencing reads and calling variants using mapping quality scores

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Similar compositional biases are caused by very different mutational effects.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Bottlenecks and broomsticks: the molecular evolution of Mycobacterium bovis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Influence of ESAT-6 secretion system 1 (RD1) of Mycobacterium tuberculosis on the interaction between mycobacteria and the host immune system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Individual RD1-region genes are required for export of ESAT-6/CFP-10 and for virulence of Mycobacterium tuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Traces of human migrations in Helicobacter pylori populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Deletion of RD1 from Mycobacterium tuberculosis mimics bacille Calmette-Guérin attenuation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Loss of RD1 contributed to the attenuation of the live tuberculosis vaccines Mycobacterium bovis BCG and Mycobacterium microti

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

A new evolutionary scenario for the Mycobacterium tuberculosis complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Simultaneous infection with multiple strains of Mycobacterium tuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

A novel pathogenic taxon of the Mycobacterium tuberculosis complex, Canetti: characterization of an exceptional isolate from Africa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Statistical tests for detecting gene conversion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

24 September 2018

Horizontal Transfer of a Virulence Operon to the Ancestor of Mycobacterium tuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317154

6 December 2018

Simultaneous infection with multiple strains of Mycobacterium tuberculosis identified by restriction fragment length polymorphism analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22377718

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifying control mechanisms of granuloma formation during M. tuberculosis infection using an agent-based model

1 reference

https://pubmed.ncbi.nlm.nih.gov/22377718

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/22377718

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli

1 reference

https://pubmed.ncbi.nlm.nih.gov/22377718

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

THE BOTTLENECK EFFECT AND GENETIC VARIABILITY IN POPULATIONS

1 reference

https://pubmed.ncbi.nlm.nih.gov/22377718

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Properties of a neutral allele model with intragenic recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/22377718

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.129544.111

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

release_otsfzzg4xnfzjcbup4sjisjkmy

1 reference

https://api.fatcat.wiki/v0/release/otsfzzg4xnfzjcbup4sjisjkmy

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

ResearchGate publication ID

0 references

Sitelinks

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