(Q36067075)

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Cells adapt to the epigenomic disruption caused by histone deacetylase inhibitors through a coordinated, chromatin-mediated transcriptional response

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12 August 2017

Cells adapt to the epigenomic disruption caused by histone deacetylase inhibitors through a coordinated, chromatin-mediated transcriptional response (English)

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12 August 2017

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2 June 2020

Maaike G Wiersma

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2 June 2020

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Bryan M Turner

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16 September 2015

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12 August 2017

Epigenetics & Chromatin

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2 June 2020

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Metabolic regulation of histone post-translational modifications.

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2 October 2017

Selective inhibition of EZH2 and EZH1 enzymatic activity by a small molecule suppresses MLL-rearranged leukemia

1 reference

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Genome-wide and single-cell analyses reveal a context dependent relationship between CBP recruitment and gene expression

1 reference

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H3S28 phosphorylation is a hallmark of the transcriptional response to cellular stress.

1 reference

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Evaluation of class I HDAC isoform selectivity of largazole analogues

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2 October 2017

PRC1 complex diversity: where is it taking us?

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Ruled by ubiquitylation: a new order for polycomb recruitment

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Histone deacetylase (HDAC) 1 and 2 are essential for accurate cell division and the pluripotency of embryonic stem cells

1 reference

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Defining functional DNA elements in the human genome

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2 October 2017

Erasers of histone acetylation: the histone deacetylase enzymes

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The role of short-chain fatty acids in health and disease.

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New and emerging HDAC inhibitors for cancer treatment

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The Drosophila eve insulator Homie promotes eve expression and protects the adjacent gene from repression by polycomb spreading

1 reference

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2 October 2017

Transcriptional regulation by Polycomb group proteins

1 reference

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2 October 2017

H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction

1 reference

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Beneficial metabolic effects of a probiotic via butyrate-induced GLP-1 hormone secretion.

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2 October 2017

The physiological roles of histone deacetylase (HDAC) 1 and 2: complex co-stars with multiple leading parts

1 reference

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2 October 2017

The histone deacetylase inhibitor sodium valproate causes limited transcriptional change in mouse embryonic stem cells but selectively overrides Polycomb-mediated Hoxb silencing

1 reference

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2 October 2017

An orally bioavailable chemical probe of the Lysine Methyltransferases EZH2 and EZH1

1 reference

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2 October 2017

Cross-species functional genomic analysis identifies resistance genes of the histone deacetylase inhibitor valproic acid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Asymmetrically modified nucleosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

An integrated encyclopedia of DNA elements in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

The adjustable nucleosome: an epigenetic signaling module

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Genes are often sheltered from the global histone hyperacetylation induced by HDAC inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Pluripotency-related, valproic acid (VPA)-induced genome-wide histone H3 lysine 9 (H3K9) acetylation patterns in embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Histone methylation by PRC2 is inhibited by active chromatin marks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Histone code pathway involving H3 S28 phosphorylation and K27 acetylation activates transcription and antagonizes polycomb silencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Dynamic interplay between histone H3 modifications and protein interpreters: emerging evidence for a "histone language".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Distinct roles of GCN5/PCAF-mediated H3K9ac and CBP/p300-mediated H3K18/27ac in nuclear receptor transactivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Detailed specificity analysis of antibodies binding to modified histone tails with peptide arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

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Polycomb group protein displacement and gene activation through MSK-dependent H3K27me3S28 phosphorylation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Ring1B and Suv39h1 delineate distinct chromatin states at bivalent genes during early mouse lineage commitment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Jarid2 is a PRC2 component in embryonic stem cells required for multi-lineage differentiation and recruitment of PRC1 and RNA Polymerase II to developmental regulators.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Characterization of an antagonistic switch between histone H3 lysine 27 methylation and acetylation in the transcriptional regulation of Polycomb group target genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Polycomb complexes act redundantly to repress genomic repeats and genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Discovery, biological activity, synthesis and potential therapeutic utility of naturally occurring histone deacetylase inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Drosophila MSL complex globally acetylates H4K16 on the male X chromosome for dosage compensation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Improved protocols for the illumina genome analyzer sequencing system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Effects of growth differentiation factor 9 on cell cycle regulators and ERK42/44 in human granulosa cell proliferation

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2 October 2017

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2 October 2017

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

A model for transmission of the H3K27me3 epigenetic mark

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

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1 reference

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The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Valproic acid as epigenetic cancer drug: preclinical, clinical and transcriptional effects on solid tumors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

A shifting paradigm: histone deacetylases and transcriptional activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Histone deacetylase inhibitors: molecular mechanisms of action

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Butyrate mediates decrease of histone acetylation centered on transcription start sites and down-regulation of associated genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Chromatin modifications and their function

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2 October 2017

Defining an epigenetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Cross-talk between histone modifications in response to histone deacetylase inhibitors: MLL4 links histone H3 acetylation and histone H3K4 methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns

1 reference

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2 October 2017

Hormonal control of androgen receptor function through SIRT1

1 reference

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2 October 2017

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Chromatin signatures of pluripotent cell lines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Histone modifications: signalling receptors and potential elements of a heritable epigenetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Genome-wide analysis of HDAC function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Identification and functional significance of genes regulated by structurally different histone deacetylase inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote

1 reference

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2 October 2017

Immunoprecipitation of native chromatin: NChIP.

1 reference

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2 October 2017

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1 reference

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2 October 2017

Preparation of site-specific antibodies to acetylated histones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

The expression of a small fraction of cellular genes is changed in response to histone hyperacetylation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Histone H4 isoforms acetylated at specific lysine residues define individual chromosomes and chromatin domains in Drosophila polytene nuclei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

2 October 2017

Acetylome profiling reveals overlap in the regulation of diverse processes by sirtuins, gcn5, and esa1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

11 July 2018

Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

11 July 2018

HAT-HDAC interplay modulates global histone H3K14 acetylation in gene-coding regions during stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

11 July 2018

Altered nucleosomes of active nucleolar chromatin contain accessible histone H3 in its hyperacetylated forms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

11 July 2018

Epstein-Barr virus (EBV)-associated lymphoproliferative disease in the SCID mouse model: implications for the pathogenesis of EBV-positive lymphomas in man

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

11 July 2018

50 years of protein acetylation: from gene regulation to epigenetics, metabolism and beyond

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

23 September 2018

Valproic acid extends Caenorhabditis elegans lifespan.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

23 September 2018

Mapping global histone acetylation patterns to gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572612

23 September 2018

Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells

1 reference

https://api.crossref.org/works/10.1186%2FS13072-015-0021-9

21 January 2018

Reversible arrest of proliferation of rat 3Y1 fibroblasts in both the G1 and G2 phases by trichostatin A

1 reference

https://api.crossref.org/works/10.1186%2FS13072-015-0021-9

21 January 2018

Physiological concentrations of butyrate favorably modulate genes of oxidative and metabolic stress in primary human colon cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/26380582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of histone hyperacetylation and hypoacetylation on RNA synthesis in HTC cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/26380582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Affinity chromatographic purification of nucleosomes containing transcriptionally active DNA sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/26380582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The disposition of valproate and its metabolites in the late first trimester and early second trimester of pregnancy in maternal serum, urine, and amniotic fluid: effect of dose, co-medication, and the presence of spina bifida

1 reference

https://pubmed.ncbi.nlm.nih.gov/26380582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The identification of distinct populations of acetylated histone

1 reference

https://pubmed.ncbi.nlm.nih.gov/26380582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Histone deacetylase inhibitors as potential anti-skin cancer agents

1 reference

https://pubmed.ncbi.nlm.nih.gov/26380582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of trichostatins on differentiation of murine erythroleukemia cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/26380582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oral valproic acid for epilepsy--long-term experience in therapy and side effects

1 reference

https://pubmed.ncbi.nlm.nih.gov/26380582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S13072-015-0021-9

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26380582%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26380582%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26380582%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

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