(Q36067318)

English

High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes

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scholarly article

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Europe PubMed Central

PMC publication ID

12 August 2017

High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes (English)

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

1 reference

based on heuristic

inferred from title

Flavobacterium rivuli

object named as

Flavobacterium rivuli

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

Natalia N. Ivanova

14

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Europe PubMed Central

PMC publication ID

12 August 2017

18

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Europe PubMed Central

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12 August 2017

Nikos C. Kyrpides

19

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12 August 2017

7

object named as

Alla Lapidus

0 references

Hans-Peter Klenk

20

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Hans-Peter Klenk

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Erko Stackebrandt

2

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Erko Stackebrandt

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17

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Tanja Woyke

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Jan P Meier-Kolthoff

object named as

Jan P Meier-Kolthoff

3

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Victor Markowitz

16

object named as

Victor Markowitz

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Europe PubMed Central

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12 August 2017

13

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Amrita Pati

1 reference

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12 August 2017

Marcel Huntemann

12

object named as

Marcel Huntemann

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12 August 2017

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Konstantinos Mavromatis

15

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Konstantinos Mavromatis

1 reference

Europe PubMed Central

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12 August 2017

6

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Manfred Rohde

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12 August 2017

Richard L. Hahnke

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Richard L Hahnke

1 reference

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12 August 2017

9

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Stephan Trong

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12 August 2017

Brian J. Tindall

4

object named as

Brian J Tindall

1 reference

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12 August 2017

author name string

Sixing Huang

5

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12 August 2017

James Han

8

1 reference

Europe PubMed Central

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12 August 2017

Matthew Haynes

10

1 reference

Europe PubMed Central

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12 August 2017

T B K Reddy

11

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12 August 2017

publication date

30 July 2015

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Europe PubMed Central

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12 August 2017

Standards in genomic sciences

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Europe PubMed Central

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12 August 2017

10

1 reference

Europe PubMed Central

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12 August 2017

46

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Europe PubMed Central

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12 August 2017

copyright license

Creative Commons Attribution 4.0 International

30 July 2015

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April 2022 Public Data File from Crossref

copyright status

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describes a project that uses

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ggplot

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/s40793-015-0032-y

0 references

Genomic standards consortium projects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572689

2 October 2017

Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project

1 reference

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2 October 2017

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

1 reference

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2 October 2017

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1 reference

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The DNA bank network: the start from a german initiative

1 reference

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2 October 2017

Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes 'Gramella forsetii' KT0803.

1 reference

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2 October 2017

Pfam: the protein families database

1 reference

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2 October 2017

The carbohydrate-active enzymes database (CAZy) in 2013

1 reference

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MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

1 reference

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2 October 2017

Chryseobacterium hispalense sp. nov., a plant-growth-promoting bacterium isolated from a rainwater pond in an olive plant nursery, and emended descriptions of Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Ch

1 reference

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2 October 2017

Flavobacterium hauense sp. nov., isolated from soil and emended descriptions of Flavobacterium subsaxonicum, Flavobacterium beibuense and Flavobacterium rivuli

1 reference

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Genome sequence-based species delimitation with confidence intervals and improved distance functions

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Detecting sequence homology at the gene cluster level with MultiGeneBlast

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Gliding motility and Por secretion system genes are widespread among members of the phylum bacteroidetes

1 reference

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2 October 2017

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

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RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data

1 reference

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2 October 2017

The Genomic Standards Consortium

1 reference

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RAPSearch: a fast protein similarity search tool for short reads

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Complete genome sequence of Isosphaera pallida type strain (IS1B).

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Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

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High-quality draft assemblies of mammalian genomes from massively parallel sequence data

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Specificity of Polysaccharide Use in Intestinal Bacteroides Species Determines Diet-Induced Microbiota Alterations

1 reference

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2 October 2017

En route to a genome-based classification of Archaea and Bacteria?

1 reference

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2 October 2017

Prodigal: prokaryotic gene recognition and translation initiation site identification

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2 October 2017

Flavobacterium beibuense sp. nov., isolated from marine sediment

1 reference

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2 October 2017

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

1 reference

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2 October 2017

The occupant as a source of house dust bacteria

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2 October 2017

Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis

1 reference

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2 October 2017

Flavobacterium rivuli sp. nov., Flavobacterium subsaxonicum sp. nov., Flavobacterium swingsii sp. nov. and Flavobacterium reichenbachii sp. nov., isolated from a hard water rivulet

1 reference

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2 October 2017

IMG ER: a system for microbial genome annotation expert review and curation

1 reference

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

1 reference

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The minimum information about a genome sequence (MIGS) specification

1 reference

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

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Flavobacterium filum sp. nov., isolated from a wastewater treatment plant in Korea.

1 reference

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Multiple sequence alignment using partial order graphs

1 reference

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1 reference

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List of Bacterial Names with Standing in Nomenclature: a folder available on the Internet

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Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs

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Identification of novel biomass-degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation

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Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age.

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When should a DDH experiment be mandatory in microbial taxonomy?

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Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom.

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1 reference

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23 September 2018

1 reference

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List of new names and new combinations previously effectively, but not validly, published

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21 January 2018

List of new names and new combinations previously effectively, but not validly, published

1 reference

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21 January 2018

Cutting a Gordian Knot: Emended Classification and Description of the Genus Flavobacterium, Emended Description of the Family Flavobacteriaceae, and Proposal of Flavobacterium hydatis nom. nov. (Basonym, Cytophaga aquatilis Strohl and Tait 1978)

1 reference

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21 January 2018

Proposal That Flavobacterium breve Be Substituted as the Type Species of the Genus in Place of Flavobacterium aquatile and Emended Description of the Genus Flavobacterium: Status of the Named Species of Flavobacterium * Request for an Opinion

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21 January 2018

Reclassification of Flavobacterium odoratum (Stutzer 1929) Strains to a New Genus, Myroides, as Myroides odoratus comb. nov. and Myroides odoratimimus sp. nov.

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21 January 2018

Genomic Standards Consortium Projects

1 reference

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21 January 2018

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Highly parallelized inference of large genome-based phylogenies

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Identifiers

10.1186/S40793-015-0032-Y

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

ResearchGate publication ID

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