(Q36139264)

12 August 2017

Divergent DNA methylation patterns associated with gene expression in rice cultivars with contrasting drought and salinity stress response (English)

1 reference

12 August 2017

0 references

1 reference

1 reference

Rohini Garg

1

1 reference

12 August 2017

Vvs Narayana Chevala

series ordinal

2

1 reference

12 August 2017

Rama Shankar

series ordinal

3

1 reference

12 August 2017

Mukesh Jain

series ordinal

4

1 reference

12 August 2017

language of work or name

English

0 references

publication date

9 October 2015

1 reference

12 August 2017

1 reference

12 August 2017

5

1 reference

12 August 2017

14922

1 reference

describes a project that uses

12 August 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing

2 October 2017

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Overproduction of stomatal lineage cells in Arabidopsis mutants defective in active DNA demethylation

2 October 2017

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Accessing epigenetic variation in the plant methylome

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Genomewide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance

2 October 2017

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Epigenetic responses to drought stress in rice (Oryza sativa L.).

2 October 2017

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Transgenerational variations in DNA methylation induced by drought stress in two rice varieties with distinguished difference to drought resistance

2 October 2017

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Rice epigenomics and epigenetics: challenges and opportunities

2 October 2017

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Plants regenerated from tissue culture contain stable epigenome changes in rice

2 October 2017

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CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize

2 October 2017

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Bioinformatic analysis of epigenetic and microRNA mediated regulation of drought responsive genes in rice

2 October 2017

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Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA

2 October 2017

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Transgenerational inheritance of modified DNA methylation patterns and enhanced tolerance induced by heavy metal stress in rice (Oryza sativa L.).

2 October 2017

1 reference

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Salt stress induced variation in DNA methylation pattern and its influence on gene expression in contrasting rice genotypes

2 October 2017

1 reference

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Widespread dynamic DNA methylation in response to biotic stress

2 October 2017

1 reference

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Stress-induced chromatin changes: a critical view on their heritability

2 October 2017

1 reference

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Trans chromosomal methylation in Arabidopsis hybrids

2 October 2017

1 reference

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NGS QC Toolkit: a toolkit for quality control of next generation sequencing data

2 October 2017

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The progeny of Arabidopsis thaliana plants exposed to salt exhibit changes in DNA methylation, histone modifications and gene expression

2 October 2017

1 reference

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Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis

2 October 2017

1 reference

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High-throughput approaches for plant epigenomic studies

2 October 2017

1 reference

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Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.).

2 October 2017

1 reference

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Local DNA hypomethylation activates genes in rice endosperm

2 October 2017

1 reference

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Comparative analysis of drought-responsive transcriptome in Indica rice genotypes with contrasting drought tolerance

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Transgenerational inheritance and resetting of stress-induced loss of epigenetic gene silencing in Arabidopsis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Genome-wide evolutionary analysis of eukaryotic DNA methylation.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Environmentally induced phenotypes and DNA methylation: how to deal with unpredictable conditions until the next generation and after.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

2 October 2017

1 reference

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A metastable DWARF1 epigenetic mutant affecting plant stature in rice.

2 October 2017

1 reference

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Genome-wide demethylation of Arabidopsis endosperm.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Extensive demethylation of repetitive elements during seed development underlies gene imprinting

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Epigenetic regulation of stress responses in plants

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Epigenetic regulation of transposable elements in plants

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

The methylome: approaches for global DNA methylation profiling

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Methyl-CpG binding proteins: specialized transcriptional repressors or structural components of chromatin?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Transposable elements and the epigenetic regulation of the genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Role of transposable elements in heterochromatin and epigenetic control

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Arabidopsis MBD proteins show different binding specificities and nuclear localization

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

DNA methylation patterns and epigenetic memory

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Gene expression profiles during the initial phase of salt stress in rice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

DNA methylation and chromatin modification.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Methylation of coding region alone inhibits gene expression in plant protoplasts

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Cytosine methylation prevents binding to DNA of a HeLa cell transcription factor required for optimal expression of the adenovirus major late promoter

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Induced and constitutive DNA methylation in a salinity-tolerant wheat introgression line.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Genome-wide analysis of DNA methylation in soybean.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Modulation of transcription factor and metabolic pathway genes in response to water-deficit stress in rice

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Validation of internal control genes for quantitative gene expression studies in chickpea (Cicer arietinum L.).

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Rice cytosine DNA methyltransferases - gene expression profiling during reproductive development and abiotic stress

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Selective epigenetic control of retrotransposition in Arabidopsis.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Association between up-regulation of stress-responsive genes and hypomethylation of genomic DNA in tobacco plants

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Analysis of the molecular basis of flowering time variation in Arabidopsis accessions.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Periodic DNA methylation in maize nucleosomes and demethylation by environmental stress

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598828

Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression inOryza sativa(rice)

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP14922

Abiotic-stress induces demethylation and transcriptional activation of a gene encoding a glycerophosphodiesterase-like protein in tobacco plants

21 January 2018

1 reference

12 December 2020

Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis

1 reference

12 December 2020

Transcriptional regulatory networks in response to abiotic stresses in Arabidopsis and grasses

1 reference

12 December 2020

Divergent DNA methylation patterns associated with abiotic stress in Hevea brasiliensis

1 reference

12 December 2020

Identifiers

DOI

10.1038/SREP14922

1 reference

12 August 2017

1 reference

12 August 2017

PubMed publication ID

26449881

1 reference