(Q36206456)

12 August 2017

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title

Coupling immunity and programmed cell suicide in prokaryotes: Life-or-death choices (English)

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12 August 2017

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1

Eugene V Koonin

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12 August 2017

Feng Zhang

2

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PubMed ID

27896818

12 August 2017

language of work or name

English

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publication date

29 November 2016

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12 August 2017

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12 August 2017

39

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12 August 2017

1

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12 August 2017

1-9

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A virocentric perspective on the evolution of life

12 August 2017

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

The major role of viruses in cellular evolution: facts and hypotheses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Are viruses alive? The replicator paradigm sheds decisive light on an old but misguided question

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Hypercycles and the origin of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

From replicators to reproducers: the first major transitions leading to life

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Inevitability of genetic parasites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Virus world as an evolutionary network of viruses and capsidless selfish elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

The great billion-year war between ribosome- and capsid-encoding organisms (cells and viruses) as the major source of evolutionary novelties

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Comparative genomics of defense systems in archaea and bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Trained immunity: a memory for innate host defense

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Do all creatures possess an acquired immune system of some sort?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Persister cells, dormancy and infectious disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

New-found fundamentals of bacterial persistence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Unravelling the structural and mechanistic basis of CRISPR-Cas systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

An updated evolutionary classification of CRISPR-Cas systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

CRISPR-Cas immunity in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Cas9 as a versatile tool for engineering biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Development and applications of CRISPR-Cas9 for genome engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

CRISPR-Cas systems for editing, regulating and targeting genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Genome editing. The new frontier of genome engineering with CRISPR-Cas9

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Beyond editing: repurposing CRISPR-Cas9 for precision genome regulation and interrogation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Is evolution Darwinian or/and Lamarckian?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Just how Lamarckian is CRISPR-Cas immunity: the continuum of evolvability mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

CRISPR-Cas: evolution of an RNA-based adaptive immunity system in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

The meaning of biological information

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Self-tolerance and autoimmunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Autoimmune Diseases as the Loss of Active “Self‐Control”

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Self-targeting by CRISPR: gene regulation or autoimmunity?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

CRISPR-mediated adaptive immune systems in bacteria and archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Restriction endonucleases: classification, properties, and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Diverse functions of restriction-modification systems in addition to cellular defense

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Type II restriction endonucleases--a historical perspective and more

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Type I restriction enzymes and their relatives.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Diversity of bacterial type II toxin-antitoxin systems: a comprehensive search and functional analysis of novel families

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

To be or not to be: regulation of restriction-modification systems and other toxin-antitoxin systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Prokaryotic toxin-antitoxin stress response loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Bacterial toxin-antitoxin systems: more than selfish entities?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Selfish behavior of restriction-modification systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

From damaged genome to cell surface: transcriptome changes during bacterial cell death triggered by loss of a restriction-modification gene complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Conflicts targeting epigenetic systems and their resolution by cell death: novel concepts for methyl-specific and other restriction systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Cleavage of a model DNA replication fork by a methyl-specific endonuclease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Success of a suicidal defense strategy against infection in a structured habitat

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Self versus non-self discrimination during CRISPR RNA-directed immunity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Type I-E CRISPR-cas systems discriminate target from non-target DNA through base pairing-independent PAM recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Structural basis for promiscuous PAM recognition in type I-E Cascade from E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Identifying and Visualizing Functional PAM Diversity across CRISPR-Cas Systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Guide RNAs: A Glimpse at the Sequences that Drive CRISPR-Cas Systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

CRISPR adaptation biases explain preference for acquisition of foreign DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Cas9 function and host genome sampling in Type II-A CRISPR-Cas adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Cas1–Cas2 complex formation mediates spacer acquisition during CRISPR–Cas adaptive immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Integrase-mediated spacer acquisition during CRISPR-Cas adaptive immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

CRISPR-Cas adaptation: insights into the mechanism of action

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Structural and functional characterization of Streptococcus pyogenes Cas2 protein under different pH conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Nuclease activity of Legionella pneumophila Cas2 promotes intracellular infection of amoebal host cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Dual nuclease activity of a Cas2 protein in CRISPR-Cas subtype I-B of Leptospira interrogans

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Bipartite recognition of target RNAs activates DNA cleavage by the Type III-B CRISPR-Cas system

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

First experimental evidence for the presence of a CRISPR toxin in sulfolobus

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

DNA binding properties of the small cascade subunit Csa5

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

RNA processing and decay in bacteriophage T4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

PrrC-anticodon nuclease: functional organization of a prototypical bacterial restriction RNase

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Phage T4-induced dTTP accretion bolsters a tRNase-based host defense

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Phage T4-coded Stp: double-edged effector of coupled DNA and tRNA-restriction systems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Determinants of the cytotoxicity of PrrC anticodon nuclease and its amelioration by tRNA repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

RloC: a wobble nucleotide-excising and zinc-responsive bacterial tRNase

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

A DNA break inducer activates the anticodon nuclease RloC and the adaptive immunity in Acinetobacter baylyi ADP1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Phage T4-induced DNA breaks activate a tRNA repair-defying anticodon nuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Origins and evolution of viruses of eukaryotes: The ultimate modularity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Dual nucleotide specificity determinants of an infection aborting anticodon nuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Evolution of the CRISPR-Cas adaptive immunity systems in prokaryotes: models and observations on virus-host coevolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Regulated CRISPR Modules Exploit a Dual Defense Strategy of Restriction and Abortive Infection in a Model of Prokaryote-Phage Coevolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Immunity, suicide or both? Ecological determinants for the combined evolution of anti-pathogen defense systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Degradation of Phage Transcripts by CRISPR-Associated RNases Enables Type III CRISPR-Cas Immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Stability of EcoRI restriction-modification enzymes in vivo differentiates the EcoRI restriction-modification system from other postsegregational cell killing systems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Maintenance forced by a restriction-modification system can be modulated by a region in its modification enzyme not essential for methyltransferase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

Staying alive: cell death in antiviral immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

REBASE--a database for DNA restriction and modification: enzymes, genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201600186

21 January 2018

Identifiers

DOI

10.1002/BIES.201600186

1 reference

12 August 2017

1 reference

PubMed ID

27896818