(Q36377751)

English

Combining Mass Spectrometric Metabolic Profiling with Genomic Analysis: A Powerful Approach for Discovering Natural Products from Cyanobacteria

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scholarly article

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Europe PubMed Central

PMC publication ID

13 August 2017

Combining Mass Spectrometric Metabolic Profiling with Genomic Analysis: A Powerful Approach for Discovering Natural Products from Cyanobacteria (English)

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

1 reference

based on heuristic

inferred from title

Moorea bouillonii

1 reference

1 reference

1 reference

1 reference

natural product

1 reference

based on heuristic

inferred from title

metabolic profiling

1 reference

based on heuristic

inferred from title

object named as

Jehad Almaliti

2

0 references

Anton Korobeynikov

object named as

Anton Korobeynikov

5

0 references

Brendan Michael Duggan

object named as

Brendan M Duggan

7

0 references

Vincenzo Di Marzo

object named as

Vincenzo Di Marzo

8

0 references

William H. Gerwick

12

object named as

William H Gerwick

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

Pieter C. Dorrestein

10

object named as

Pieter C Dorrestein

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

David H. Sherman

9

object named as

David H Sherman

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

11

object named as

Lena Gerwick

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

Karin Kleigrewe

1

object named as

Karin Kleigrewe

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

4

object named as

Robin B Kinnel

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

author name string

Isaac Yuheng Tian

3

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

Emily A Monroe

6

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

publication date

7 July 2015

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

full work available at URL

https://europepmc.org/articles/pmc4681511?pdf=render

1 reference

19 March 2024

https://api.unpaywall.org/v2/10.1021/acs.jnatprod.5b00301?email=unpaywall_01@example.com

Journal of Natural Products

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

78

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Europe PubMed Central

PMC publication ID

13 August 2017

7

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

1671-1682

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

describes a project that uses

1 reference

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

online access status

1 reference

19 March 2024

https://api.unpaywall.org/v2/10.1021/acs.jnatprod.5b00301?email=unpaywall_01@example.com

access restriction status

1 reference

based on heuristic

inferred from online access status

Exploring cyanobacterial genomes for natural product biosynthesis pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

A hybrid non-ribosomal peptide/polyketide synthetase containing fatty-acyl ligase (FAAL) synthesizes the β-amino fatty acid lipopeptides puwainaphycins in the Cyanobacterium Cylindrospermum alatosporum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Genome mining: concept and strategies for natural product discovery.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Pep2Path: automated mass spectrometry-guided genome mining of peptidic natural products

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Quantitative molecular networking to profile marine cyanobacterial metabolomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Future potential for anti-infectives from bacteria - how to exploit biodiversity and genomic potential

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Assembling single-cell genomes and mini-metagenomes from chimeric MDA products

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Molecular networking as a dereplication strategy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

MS/MS networking guided analysis of molecule and gene cluster families.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

QUAST: quality assessment tool for genome assemblies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Detecting sequence homology at the gene cluster level with MultiGeneBlast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Phylogenetic inferences reveal a large extent of novel biodiversity in chemically rich tropical marine cyanobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Marine cyanobacterial fatty acid amides acting on cannabinoid receptors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Cylindrocyclophane biosynthesis involves functionalization of an unactivated carbon center

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Mass spectral molecular networking of living microbial colonies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Domain enhanced lookup time accelerated BLAST.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Lessons from the past and charting the future of marine natural products drug discovery and chemical biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Cannabinomimetic lipid from a marine cyanobacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

A mass spectrometry-guided genome mining approach for natural product peptidogenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Moorea producens gen. nov., sp. nov. and Moorea bouillonii comb. nov., tropical marine cyanobacteria rich in bioactive secondary metabolites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Cytoscape 2.8: new features for data integration and network visualization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Four-electron oxidation of p-hydroxylaminobenzoate to p-nitrobenzoate by a peroxodiferric complex in AurF from Streptomyces thioluteus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Conformational switch triggered by -ketoglutarate in a halogenase of curacin A biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Crystal Structures of Dehydratase Domains from the Curacin Polyketide Biosynthetic Pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Polyketide decarboxylative chain termination preceded by o-sulfonation in curacin a biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

New natural product biosynthetic chemistry discovered by genome mining

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Chapter 8. Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

In silico analysis of methyltransferase domains involved in biosynthesis of secondary metabolites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

ProteoWizard: open source software for rapid proteomics tools development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Visualizing the spatial distribution of secondary metabolites produced by marine cyanobacteria and sponges via MALDI-TOF imaging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

In vitro reconstitution and crystal structure of p-aminobenzoate N-oxygenase (AurF) involved in aureothin biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Antimalarial linear lipopeptides from a Panamanian strain of the marine cyanobacterium Lyngbya majuscula.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Biosynthetic characterization and chemoenzymatic assembly of the cryptophycins. Potent anticancer agents from cyanobionts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Characterization of the nodularin synthetase gene cluster and proposed theory of the evolution of cyanobacterial hepatotoxins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Lyngbyatoxin biosynthesis: sequence of biosynthetic gene cluster and identification of a novel aromatic prenyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Biosynthetic pathway and gene cluster analysis of curacin A, an antitubulin natural product from the tropical marine cyanobacterium Lyngbya majuscula

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Structure and biosynthesis of the jamaicamides, new mixed polyketide-peptide neurotoxins from the marine cyanobacterium Lyngbya majuscula

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

The barbamide biosynthetic gene cluster: a novel marine cyanobacterial system of mixed polyketide synthase (PKS)-non-ribosomal peptide synthetase (NRPS) origin involving an unusual trichloroleucyl starter unit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Perspective: transposable elements, parasitic DNA, and genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Isolation, structure determination, and biological activity of Lyngbyabellin A from the marine cyanobacterium lyngbya majuscula

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Unsaturated long-chain N-acyl-vanillyl-amides (N-AVAMs): vanilloid receptor ligands that inhibit anandamide-facilitated transport and bind to CB1 cannabinoid receptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

Isolation and characterization of multiple adenylate cyclase genes from the cyanobacterium Anabaena sp. strain PCC 7120.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

30 September 2017

antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

28 June 2018

NRPSpredictor2--a web server for predicting NRPS adenylation domain specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

28 June 2018

Carmabins A and B, new lipopeptides from the Caribbean cyanobacterium Lyngbya majuscula

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

28 June 2018

Mooreamide A: a cannabinomimetic lipid from the marine cyanobacterium Moorea bouillonii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

21 September 2018

Cis-trans amide bond rotamers in β-peptoids and peptoids: evaluation of stereoelectronic effects in backbone and side chains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

21 September 2018

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

21 September 2018

Cloning and biochemical characterization of the hectochlorin biosynthetic gene cluster from the marine cyanobacterium Lyngbya majuscula

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

21 September 2018

Structure and absolute stereochemistry of hectochlorin, a potent stimulator of actin assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

21 September 2018

Total structure determination of apratoxin A, a potent novel cytotoxin from the marine cyanobacterium Lyngbya majuscula

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681511

21 September 2018

H2BC: a new technique for NMR analysis of complex carbohydrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/26149623

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the initial enzymatic steps of barbamide biosynthesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26149623

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Barbamide, a chlorinated metabolite with molluscicidal activity from the Caribbean cyanobacterium Lyngbya majuscula

1 reference

https://pubmed.ncbi.nlm.nih.gov/26149623

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regio- and Chemoselective Enzymatic N-Oxygenation In Vivo, In Vitro, and in Flow

1 reference

https://pubmed.ncbi.nlm.nih.gov/26149623

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

More than just a Halogenase: Modification of Fatty Acyl Moieties by a Trifunctional Metal Enzyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/26149623

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Optimized NMR spectroscopic method for the configurational analysis of chemically equivalent vicinal protons

1 reference

https://pubmed.ncbi.nlm.nih.gov/26149623

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Halogenation of unactivated carbon centers in natural product biosynthesis: trichlorination of leucine during barbamide biosynthesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26149623

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fatty acids. Part 50. 13C nuclear magnetic resonance studies of olefinic fatty acids and esters

1 reference

https://pubmed.ncbi.nlm.nih.gov/26149623

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/ACS.JNATPROD.5B00301

1 reference

https://api.fatcat.wiki/v0/release/dpke5saipnayxermpwlrihj3fe

30 July 2022

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mapped directly with Wikidata item

release_dpke5saipnayxermpwlrihj3fe

1 reference

https://api.fatcat.wiki/v0/release/dpke5saipnayxermpwlrihj3fe

30 July 2022

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PMC publication ID

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https://api.fatcat.wiki/v0/release/dpke5saipnayxermpwlrihj3fe

30 July 2022

based on heuristic

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PubMed publication ID

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https://api.fatcat.wiki/v0/release/dpke5saipnayxermpwlrihj3fe

30 July 2022

based on heuristic

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ResearchGate publication ID

0 references

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