(Q33431525)

26 July 2017

Chapter 8. Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data (English)

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26 July 2017

2

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26 July 2017

1

Brian O Bachmann

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PubMed ID

19374984

26 July 2017

language of work or name

English

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publication date

1 January 2009

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26 July 2017

Methods in Enzymology

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26 July 2017

458

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26 July 2017

181-217

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Structural basis for macrolactonization by the pikromycin thioesterase

26 July 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Basic local alignment search tool

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

[25] Protein multiple sequence alignment and flexible pattern matching

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

6-Deoxyerythronolide-B synthase 2 from Saccharopolyspora erythraea. Cloning of the structural gene, sequence analysis and inferred domain structure of the multifunctional enzyme.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Conserved amino acid residues correlating with ketoreductase stereospecificity in modular polyketide synthases

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Amphotericin biosynthesis in Streptomyces nodosus: deductions from analysis of polyketide synthase and late genes

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Genome mining for novel natural product discovery

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Mining microbial genomes for new natural products and biosynthetic pathways

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Type I polyketide synthase requiring a discrete acyltransferase for polyketide biosynthesis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Using genomics to deliver natural products from symbiotic bacteria

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Structural basis for the activation of phenylalanine in the non-ribosomal biosynthesis of gramicidin S

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Active-site residue, domain and module swaps in modular polyketide synthases

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Structure elucidation and biosynthesis of fuscachelins, peptide siderophores from the moderate thermophile Thermobifida fusca

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Organization of the enzymatic domains in the multifunctional polyketide synthase involved in erythromycin formation in Saccharopolyspora erythraea

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Profile hidden Markov models

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Assembly-line enzymology for polyketide and nonribosomal Peptide antibiotics: logic, machinery, and mechanisms.

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Scores for sequence searches and alignments

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Type II polyketide synthases: gaining a deeper insight into enzymatic teamwork

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

The biosynthesis, molecular genetics and enzymology of the polyketide-derived metabolites

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Benzodiazepine biosynthesis in Streptomyces refuineus.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

InterPro: the integrative protein signature database

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Identification and characterization of the niddamycin polyketide synthase genes from Streptomyces caelestis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Charting biologically relevant chemical space: a structural classification of natural products (SCONP)

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Compound library development guided by protein structure similarity clustering and natural product structure

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Structural and functional characterization of gene clusters directing nonribosomal synthesis of bioactive cyclic lipopeptides in Bacillus amyloliquefaciens strain FZB42

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Characterization of the saframycin A gene cluster from Streptomyces lavendulae NRRL 11002 revealing a nonribosomal peptide synthetase system for assembling the unusual tetrapeptidyl skeleton in an iterative manner

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

CDD: specific functional annotation with the Conserved Domain Database

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

CD-Search: protein domain annotations on the fly

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Carrier protein recognition in siderophore-producing nonribosomal peptide synthetases

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Microbial genomics as a guide to drug discovery and structural elucidation: ECO-02301, a novel antifungal agent, as an example.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

BLAST: at the core of a powerful and diverse set of sequence analysis tools

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Evolutionary affiliations within the superfamily of ketosynthases reflect complex pathway associations.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Critical assessment of methods of protein structure prediction-Round VII

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

In silico characterization of proteins: UniProt, InterPro and Integr8.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Improved tools for biological sequence comparison

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Substrate specificity of the acyl transferase domains of EpoC from the epothilone polyketide synthase

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs)

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

In vivo characterization of tandem C-terminal thioesterase domains in arthrofactin synthetase.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Trading molecules and tracking targets in symbiotic interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Redesign of the coenzyme specificity of a dehydrogenase by protein engineering

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

The Escherichia coli malonyl-CoA:acyl carrier protein transacylase at 1.5-A resolution. Crystal structure of a fatty acid synthase component

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Polyketide biosynthesis beyond the type I, II and III polyketide synthase paradigms

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Cloning and characterization of the bleomycin biosynthetic gene cluster from Streptomyces verticillus ATCC15003.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

The type I fatty acid and polyketide synthases: a tale of two megasynthases

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https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Identification of common molecular subsequences

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Polyketide biosynthesis: a millennium review

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Crystal structure of the termination module of a nonribosomal peptide synthetase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Identification of protein sequence homology by consensus template alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Non-colinear polyketide biosynthesis in the aureothin and neoaureothin pathways: an evolutionary perspective

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

Computational approach for prediction of domain organization and substrate specificity of modular polyketide synthases

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

SEARCHPKS: A program for detection and analysis of polyketide synthase domains.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2904808-3

7 January 2021

10.1016/S0076-6879(09)04808-3

Identifiers

DOI

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release_w2yp57iambh67c3l5t6h4zsxom

26 July 2017

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Fatcat

https://api.fatcat.wiki/v0/release/w2yp57iambh67c3l5t6h4zsxom

24 November 2022

mapped directly with Wikidata item

PubMed ID

19374984

1 reference

PubMed ID

19374984