(Q36438102)

14 August 2017

1 reference

title

Thermodynamics Of alpha-Helix Formation (English)

1 reference

14 August 2017

0 references

George I Makhatadze

1

1 reference

14 August 2017

publication date

1 January 2005

1 reference

Advances in Protein Chemistry

14 August 2017

published in

1 reference

14 August 2017

volume

72

1 reference

14 August 2017

page(s)

199-226

1 reference

Helix-coil stability constants for the naturally occurring amino acids in water. XXIII. Proline parameters from random poly (hydroxybutylglutamine-co-L-proline).

14 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

1 reference

7 January 2021

Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Role of backbone solvation in determining thermodynamic beta propensities of the amino acids

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Hydrogen bond strength and beta-sheet propensities: the role of a side chain blocking effect

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Relation between peptide backbone solvation and the energetics of peptide hydrogen bonds

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

A salt bridge stabilizes the helix formed by isolated C-peptide of RNase A

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Protein and peptide folding explored with molecular simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Helix-coil transition of the isolated amino terminus of ribonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Stability of alpha-helices

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Effects of H2O and D2O on polyproline II helical structure

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Prediction of protein conformation

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Calorimetric measurement of enthalpy change in the isothermal helix-coil transition of poly-L-lysine in aqueous solution

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

The relation between amino acid sequence and protein conformation

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Side-chain entropy opposes alpha-helix formation but rationalizes experimentally determined helix-forming propensities

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Alpha-helix-forming propensities in peptides and proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Molecular dynamics simulations of helix denaturation

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Recent advances in helix-coil theory.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Determination of free energies of N-capping in alpha-helices by modification of the Lifson-Roig helix-coil therapy to include N- and C-capping.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Role of solvent in determining conformational preferences of alanine dipeptide in water.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Helix-Coil Stability Constants for the Naturally Occurring Amino Acids in Water. 11. Lysine Parameters from Random Poly(hydroxybutylglutamine-co-L-lysine)

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Noncharged amino acid residues at the solvent-exposed positions in the middle and at the C terminus of the alpha-helix have the same helical propensity

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Hydrophobic interactions at the Ccap position of the C-capping motif of alpha-helices

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

A novel method reveals that solvent water favors polyproline II over beta-strand conformation in peptides and unfolded proteins: conditional hydrophobic accessible surface area (CHASA).

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Peptide folding simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Experimental investigation of initial steps of helix propagation in model peptides.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

The influence of amino-acid sequence on protein structure

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Helix-coil stability constants for the naturally occurring amino acids in water. XIV. Methionine parameters from random poly(hydroxypropylglutamine, L-methionine)

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Alpha-helix stability in proteins. II. Factors that influence stability at an internal position

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Folding thermodynamics of peptides

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

A Three-Dimensional Model of the Myoglobin Molecule Obtained by X-Ray Analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Helix-coil stability constants for the naturally occurring amino acids in water. 16. Aspartic acid parameters from random poly(hydroxybutylglutamine-co-L-aspartic acid)

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Helix-coil stability constants for the naturally occurring amino acids in water. 15 Arginine parameters from random poly(hydroxybutylglutamine-co-L-arginine)

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Structural and sequence characteristics of long alpha helices in globular proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Elucidating the folding problem of alpha-helices: local motifs, long-range electrostatics, ionic-strength dependence and prediction of NMR parameters.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Electrostatic interactions contribute to reduced heat capacity change of unfolding in a thermophilic ribosomal protein l30e.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Heat capacity changes upon burial of polar and nonpolar groups in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Thermodynamic consequences of burial of polar and non-polar amino acid residues in the protein interior

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Both helical propensity and side-chain hydrophobicity at a partially exposed site in alpha-helix contribute to the thermodynamic stability of ubiquitin.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

The enthalpy of the alanine peptide helix measured by isothermal titration calorimetry using metal-binding to induce helix formation

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Interaction between water and polar groups of the helix backbone: an important determinant of helix propensities

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Side chain contributions to the stability of alpha-helical structure in peptides

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Heat capacities of amino acids, peptides and proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Heat capacity of proteins. I. Partial molar heat capacity of individual amino acid residues in aqueous solution: hydration effect

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Helix-coil stability constants for the naturally occurring amino acids in water. XII. Asparagine parameters from random poly(hydroxybutylglutamine-co-L-asparagine)

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Helix-Coil Stability Constants for the Naturally Occurring Amino Acids in Water. IX. Glutamic Acid Parameters from Random Poly(hydroxybutylglutamine-co-L-glutamic acid)

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Effect of central-residue replacements on the helical stability of a monomeric peptide

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Elucidating the folding problem of helical peptides using empirical parameters.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Elucidating the folding problem of helical peptides using empirical parameters. II. Helix macrodipole effects and rational modification of the helical content of natural peptides.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Elucidating the folding problem of helical peptides using empirical parameters. III. Temperature and pH dependence.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

A direct comparison of helix propensity in proteins and peptides

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Helix propensities are identical in proteins and peptides

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Helix-coil stability constants for the naturally occurring amino acids in water. XIII. The presence of by-products in amino-acid analysis of copolymers and their effect on the guest parameters; recomputed values of sigma and s for L-serine

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Simulation of the folding equilibrium of α-helical peptides: A comparison of the generalized Born approximation with explicit solvent

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Atomic simulations of protein folding, using the replica exchange algorithm.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

A helix propensity scale based on experimental studies of peptides and proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Relative helix-forming tendencies of nonpolar amino acids

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Simulations of the pressure and temperature unfolding of an alpha-helical peptide.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Side-chain structures in the first turn of the α-helix 1 1Edited by J. M. Thornton

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Correlation between the distribution of amino acids and alpha helices

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Statistical analysis of the distribution of amino acid residues among helical and non-helical regions in globular proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Calorimetric Heat of the Helix-Coil Transition of Poly-L-glutamic Acid1a

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Enthalpy of helix-coil transition: missing link in rationalizing the thermodynamics of helix-forming propensities of the amino acid residues

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Temperature dependence of the thermodynamics of helix-coil transition

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

MEARA sequence repeat of human CstF-64 polyadenylation factor is helical in solution. A spectroscopic and calorimetric study.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Deciphering rules of helix stability in peptides

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Helix propagation and N-cap propensities of the amino acids measured in alanine-based peptides in 40 volume percent trifluoroethanol

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Models for the 3(10)-helix/coil, pi-helix/coil, and alpha-helix/3(10)-helix/coil transitions in isolated peptides

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Alanine is helix-stabilizing in both template-nucleated and standard peptide helices

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Helix-Coil Stability Constants for the Naturally Occuring Amino Acids in Water. X. Tyrosine Parameters from Random Poly(hydroxypropylglutamine-co-L-tyrosine)

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

The mechanism of alpha-helix formation by peptides

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Calorimetric determination of the enthalpy change for the alpha-helix to coil transition of an alanine peptide in water

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Parameters of helix-coil transition theory for alanine-based peptides of varying chain lengths in water

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Sequence determinants of the capping box, a stabilizing motif at the N-termini of alpha-helices

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Alpha-helix stability in proteins. I. Empirical correlations concerning substitution of side-chains at the N and C-caps and the replacement of alanine by glycine or serine at solvent-exposed surfaces

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Monte Carlo studies of folding, dynamics, and stability in alpha-helices

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Alpha-helix nucleation by a calcium-binding peptide loop

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

How well can simulation predict protein folding kinetics and thermodynamics?

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Exploring the helix-coil transition via all-atom equilibrium ensemble simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Addition of side chain interactions to modified Lifson-Roig helix-coil theory: application to energetics of phenylalanine-methionine interactions.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Hydration of the peptide backbone largely defines the thermodynamic propensity scale of residues at the C' position of the C-capping box of alpha-helices

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Contribution of the 30/36 hydrophobic contact at the C-terminus of the alpha-helix to the stability of the ubiquitin molecule

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Helix-Coil Stability Constants for the Naturally Occurring Amino in Water. VII Phenylalanine Parameters from Random Poly(hydroxypropylglutamine-co-L-L-phenylalanine)

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Thermodynamics of the alpha-helix-coil transition of amphipathic peptides in a membrane environment: implications for the peptide-membrane binding equilibrium.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Isolated calcium-binding loops of EF-hand proteins can dimerize to form a native-like structure

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Free energy determinants of secondary structure formation: I. alpha-Helices

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

A microscopic view of helix propagation: N and C-terminal helix growth in alanine helices

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Toward the physical basis of thermophilic proteins: linking of enriched polar interactions and reduced heat capacity of unfolding

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2972008-8

7 January 2021

10.1016/S0065-3233(05)72008-8

Identifiers

DOI

1 reference

14 August 2017

1 reference