(Q36481391)

14 August 2017

Optical measurement of mechanical forces inside short DNA loops (English)

1 reference

14 August 2017

David Sivak

2

0 references

Jan Liphardt

object named as

Jan Liphardt

8

0 references

author name string

Hari Shroff

1

1 reference

14 August 2017

Jake J Siegel

3

1 reference

14 August 2017

A L McEvoy

4

1 reference

14 August 2017

Merek Siu

5

1 reference

14 August 2017

Andrew Spakowitz

6

1 reference

14 August 2017

Phillip L Geissler

7

1 reference

14 August 2017

language of work or name

English

0 references

publication date

7 December 2007

1 reference

14 August 2017

8

1 reference

inferred from page(s)

published in

Biophysical Journal

1 reference

14 August 2017

94

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14 August 2017

6

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14 August 2017

2179-2186

1 reference

Resource Letter: LBOT-1: Laser-based optical tweezers

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Tension-dependent DNA cleavage by restriction endonucleases: two-site enzymes are "switched off" at low force

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Generalized theory of semiflexible polymers

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Biocompatible force sensor with optical readout and dimensions of 6 nm3.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Cyclization of short DNA fragments and bending fluctuations of the double helix

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

DNA twisting flexibility and the formation of sharply looped protein-DNA complexes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Rapid spontaneous accessibility of nucleosomal DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

The structure of DNA in the nucleosome core

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

The study of protein mechanics with the atomic force microscope

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Kinetics of conformational fluctuations in DNA hairpin-loops

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Simulating DNA at low resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Promoters responsive to DNA bending: a common theme in prokaryotic gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Fluorescence resonance energy transfer and nucleic acids

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

DNA bending, flexibility, and helical repeat by cyclization kinetics.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Kinking occurs during molecular dynamics simulations of small DNA minicircles.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Spontaneous sharp bending of double-stranded DNA.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Bubble Dynamics in Double-Stranded DNA

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Single-molecule studies of DNA mechanics

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Position-dependent internal motions and effective correlation times for magnetization transfer in DNA.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257878

Statistics of loop formation along double helix DNAs

21 September 2018

1 reference

12 December 2020

Studies of base pair kinetics by NMR measurement of proton exchange

1 reference

12 December 2020

Sequence dependent rigidity of single stranded DNA

1 reference

12 December 2020

Localized single-stranded bubble mechanism for cyclization of short double helix DNA

1 reference

12 December 2020

10.1529/BIOPHYSJ.107.114413

Identifiers

DOI

1 reference

14 August 2017

1 reference

14 August 2017

1 reference