(Q36763129)

16 August 2017

Two independent transcription initiation codes overlap on vertebrate core promoters (English)

1 reference

16 August 2017

Chirag Nepal

6

0 references

Vanja Haberle

Vanja Haberle

1

0 references

Yavor Hadzhiev

Yavor Hadzhiev

3

0 references

Xianjun Dong

Xianjun Dong

8

0 references

Altuna Akalin

Altuna Akalin

9

0 references

Olivier Armant

Olivier Armant

12

0 references

Charles Plessy

Charles Plessy

4

0 references

Boris Lenhard

Boris Lenhard

17

0 references

Wilfred F J van IJcken

Wilfred F J van IJcken

11

0 references

Piero Carninci

Piero Carninci

15

0 references

Uwe Strähle

14

Uwe Strähle

1 reference

16 August 2017

7

Jochen Gehrig

1 reference

16 August 2017

10

Ana Maria Suzuki

1 reference

16 August 2017

Nan Li

2

1 reference

16 August 2017

Christopher Previti

5

1 reference

16 August 2017

Marco Ferg

13

1 reference

16 August 2017

Ferenc Müller

16

1 reference

16 August 2017

language of work or name

English

0 references

publication date

16 February 2014

1 reference

16 August 2017

1 reference

16 August 2017

507

1 reference

16 August 2017

7492

1 reference

16 August 2017

381-385

1 reference

Genomic organization of human transcription initiation complexes

16 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Perspectives on the RNA polymerase II core promoter

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

H3K4me3 interactions with TAF3 regulate preinitiation complex assembly and selective gene activation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Metazoan promoters: emerging characteristics and insights into transcriptional regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Genome-wide structure and organization of eukaryotic pre-initiation complexes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Tight associations between transcription promoter type and epigenetic variation in histone positioning and modification.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Variety of genomic DNA patterns for nucleosome positioning

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

CpG islands and the regulation of transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

A systems approach to analyze transcription factors in mammalian cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

CpG islands influence chromatin structure via the CpG-binding protein Cfp1.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Chromatin signature of embryonic pluripotency is established during genome activation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Shifting players and paradigms in cell-specific transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

The logic of chromatin architecture and remodelling at promoters

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

The maternal-to-zygotic transition: a play in two acts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

TBP2 is a substitute for TBP in Xenopus oocyte transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

What controls nucleosome positions?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Model-based analysis of ChIP-Seq (MACS)

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

High-resolution profiling of histone methylations in the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

A genomic code for nucleosome positioning

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Genome-wide analysis of mammalian promoter architecture and evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

CAGE: cap analysis of gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Transcriptome analysis of zebrafish embryogenesis using microarrays

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Bioconductor: open software development for computational biology and bioinformatics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Analysis of gene expression data using self-organizing maps

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

The zebrafish midblastula transition

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

High-frequency generation of transgenic zebrafish which reliably express GFP in whole muscles or the whole body by using promoters of zebrafish origin.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Prepatterning of developmental gene expression by modified histones before zygotic genome activation.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

TBP2, a vertebrate-specific member of the TBP family, is required in embryonic development of zebrafish.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Developmental change in TATA-box utilization during preimplantation mouse development.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820030

Q&A: A lateral thinker. Interview by Diane Wu.

5 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE12974

Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24531765

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Tol2-mediated transgenesis, gene trapping, enhancer trapping, and the Gal4-UAS system.

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE12974

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE12974

1 reference

journals/nature/HaberleLHPPNGDA14

16 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 August 2017

PubMed publication ID

24531765

1 reference