(Q36770758)

16 August 2017

TFE and Spt4/5 open and close the RNA polymerase clamp during the transcription cycle (English)

1 reference

Correction for Schulz et al., TFE and Spt4/5 open and close the RNA polymerase clamp during the transcription cycle

16 August 2017

corrigendum / erratum

0 references

author

Katherine Smollett

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Finn Werner

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

4

Philip Tinnefeld

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

6

Dina Grohmann

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

author name string

Sarah Schulz

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Andreas Gietl

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

language of work or name

English

0 references

publication date

15 March 2016

1 reference

Proceedings of the National Academy of Sciences of the United States of America

16 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

volume

113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

issue

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

page(s)

E1816-25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json

Archaeal TFEα/β is a hybrid of TFIIE and the RNA polymerase III subcomplex hRPC62/39.

1 June 2020

cites work

1 reference

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Fluorescently labeled recombinant RNAP system to probe archaeal transcription initiation.

29 September 2017

1 reference

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RNA polymerase-induced remodelling of NusA produces a pause enhancement complex.

29 September 2017

1 reference

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The ratcheted and ratchetable structural states of RNA polymerase underlie multiple transcriptional functions

29 September 2017

1 reference

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The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration

29 September 2017

1 reference

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RNA polymerase pausing and nascent-RNA structure formation are linked through clamp-domain movement

29 September 2017

1 reference

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RNA polymerase I structure and transcription regulation

29 September 2017

1 reference

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Architecture of an RNA polymerase II transcription pre-initiation complex

29 September 2017

1 reference

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Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism

29 September 2017

1 reference

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Making connections--strategies for single molecule fluorescence biophysics

29 September 2017

1 reference

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The Mechanism of E. coli RNA Polymerase Regulation by ppGpp Is Suggested by the Structure of their Complex

29 September 2017

1 reference

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Structural visualization of key steps in human transcription initiation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Structural basis of transcriptional pausing in bacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

RNA polymerase III subunit architecture and implications for open promoter complex formation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Opening and closing of the bacterial RNA polymerase clamp

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Crosslinking-MS analysis reveals RNA polymerase I domain architecture and basis of rRNA cleavage

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Conservation between the RNA polymerase I, II, and III transcription initiation machineries

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

A nexus for gene expression-molecular mechanisms of Spt5 and NusG in the three domains of life

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

New target for inhibition of bacterial RNA polymerase: 'switch region'

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

The β subunit gate loop is required for RNA polymerase modification by RfaH and NusG.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

The TFIIF-like Rpc37/53 dimer lies at the center of a protein network to connect TFIIIC, Bdp1, and the RNA polymerase III active center

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Structural basis of RNA polymerase II backtracking, arrest and reactivation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Evolution of multisubunit RNA polymerases in the three domains of life.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

RNA polymerase and transcription elongation factor Spt4/5 complex structure

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Cycling through transcription with the RNA polymerase F/E (RPB4/7) complex: structure, function and evolution of archaeal RNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

RNA polymerase I contains a TFIIF-related DNA-binding subcomplex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Optimizing Methods to Recover Absolute FRET Efficiency from Immobilized Single Molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

E. coli NusG inhibits backtracking and accelerates pause-free transcription by promoting forward translocation of RNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Spt4/5 stimulates transcription elongation through the RNA polymerase clamp coiled-coil motif

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Structural Basis of Transcription: Backtracked RNA Polymerase II at 3.4 Angstrom Resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

The RNA polymerase "switch region" is a target for inhibitors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

A practical guide to single-molecule FRET

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

The X-ray crystal structure of RNA polymerase from Archaea

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Structural basis for substrate loading in bacterial RNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Structural basis for transcription elongation by bacterial RNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

A fully recombinant system for activator-dependent archaeal transcription.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Structural basis of transcription: separation of RNA from DNA by RNA polymerase II

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Complete, 12-subunit RNA polymerase II at 4.1-Å resolution: Implications for the initiation of transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Architecture of initiation-competent 12-subunit RNA polymerase II

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Structure of yeast RNA polymerase II in solution: implications for enzyme regulation and interaction with promoter DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Overextended RNA:DNA hybrid as a negative regulator of RNA polymerase II processivity.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Cell surface engineering by a modified Staudinger reaction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Orientation of the transcription preinitiation complex in archaea

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Molecular structures of unbound and transcribing RNA polymerase III.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

The NusA N-terminal domain is necessary and sufficient for enhancement of transcriptional pausing via interaction with the RNA exit channel of RNA polymerase

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Azide-specific labeling of biomolecules by Staudinger-Bertozzi ligation phosphine derivatives of fluorescent probes suitable for single-molecule fluorescence spectroscopy

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Direct modulation of RNA polymerase core functions by basal transcription factors.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Complete architecture of the archaeal RNA polymerase open complex from single-molecule FRET and NPS.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Molecular mechanisms of RNA polymerase--the F/E (RPB4/7) complex is required for high processivity in vitro.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Transcription factor E is a part of transcription elongation complexes

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Addition of p-azido-L-phenylalanine to the genetic code of Escherichia coli

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Analysis of the role of TFIIE in transcriptional regulation through structure-function studies of the TFIIEbeta subunit

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

RNA polymerase switches between inactivated and activated states By translocating back and forth along the DNA and the RNA.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822635

Dynamic Architecture of a Minimal RNA Polymerase II Open Promoter Complex

5 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1515817113

Effects of NusA protein on transcription termination in the tryptophan operon of Escherichia coli

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1515817113

Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26979960

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The RPB7 orthologue E' is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26979960

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

RNAP subunits F/E (RPB4/7) are stably associated with archaeal RNA polymerase: using fluorescence anisotropy to monitor RNAP assembly in vitro

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26979960

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1515817113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

PubMed publication ID

26979960

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26979960%20AND%20SRC:MED&resulttype=core&format=json