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English
UpSETing chromatin during non-coding RNA production.
scientific article published on 05 June 2013
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Europe PubMed Central
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3680234
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2 March 2020
title
UpSETing chromatin during non-coding RNA production
(English)
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Europe PubMed Central
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3680234
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2 March 2020
main subject
non-coding RNA
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author
Swaminathan Venkatesh
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1
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Europe PubMed Central
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3680234
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2 March 2020
Michaela Smolle
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3
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Europe PubMed Central
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3680234
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2 March 2020
Jerry L Workman
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Jerry L Workman
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3680234
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2 March 2020
publication date
5 June 2013
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2 March 2020
published in
Epigenetics & Chromatin
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Europe PubMed Central
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3680234
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2 March 2020
volume
6
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3680234
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2 March 2020
issue
1
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Europe PubMed Central
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3680234
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2 March 2020
page(s)
16
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2 March 2020
exact match
https://scigraph.springernature.com/pub.10.1186/1756-8935-6-16
0 references
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Bidirectional promoters generate pervasive transcription in yeast
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A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
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29 September 2017
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.
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29 September 2017
Nucleosome displacement in transcription
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29 September 2017
Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II.
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29 September 2017
Non-coding RNA
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29 September 2017
The BUR1 cyclin-dependent protein kinase is required for the normal pattern of histone methylation by SET2.
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29 September 2017
A high-resolution map of transcription in the yeast genome
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29 September 2017
Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation
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29 September 2017
Drosophila Paf1 modulates chromatin structure at actively transcribed genes.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
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29 September 2017
Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
29 September 2017
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
29 September 2017
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
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29 September 2017
Genome-scale identification of nucleosome positions in S. cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
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29 September 2017
Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
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29 September 2017
Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
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29 September 2017
Chromatin remodeling by RNA polymerases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
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29 September 2017
Transcription elongation factors repress transcription initiation from cryptic sites.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
29 September 2017
The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
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29 September 2017
Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
29 September 2017
H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
29 September 2017
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
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29 September 2017
Gene loops enhance transcriptional directionality
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
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27 June 2018
A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
27 June 2018
Histone H3 lysine 36 methylation targets the Isw1b remodeling complex to chromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
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27 June 2018
Biased chromatin signatures around polyadenylation sites and exons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
27 June 2018
Antisense transcription controls cell fate in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
27 June 2018
XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
4 September 2018
Histone chaperone spt16 promotes redeposition of the original h3-h4 histones evicted by elongating RNA polymerase.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
4 September 2018
Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
4 September 2018
A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
4 September 2018
H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
4 September 2018
High-throughput mapping of the chromatin structure of human promoters.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680234
retrieved
4 September 2018
Dynamics of Replication-Independent Histone Turnover in Budding Yeast
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1186%2F1756-8935-6-16
retrieved
21 January 2018
Combined Action of PHD and Chromo Domains Directs the Rpd3S HDAC to Transcribed Chromatin
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1186%2F1756-8935-6-16
retrieved
21 January 2018
Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23738864
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23738864
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23738864
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/1756-8935-6-16
1 reference
stated in
Europe PubMed Central
PMC publication ID
3680234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23738864%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 March 2020
Dimensions Publication ID
1026426565
0 references
PMC publication ID
3680234
1 reference
stated in
Europe PubMed Central
PMC publication ID
3680234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23738864%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 March 2020
PubMed publication ID
23738864
1 reference
stated in
Europe PubMed Central
PMC publication ID
3680234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23738864%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 March 2020
ResearchGate publication ID
237058806
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