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Intersubunit Bridges of the Bacterial Ribosome
scientific article published on 12 February 2016
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scholarly article
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Europe PubMed Central
PMC publication ID
4884490
retrieved
17 August 2017
title
Intersubunit Bridges of the Bacterial Ribosome
(English)
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stated in
Europe PubMed Central
PMC publication ID
4884490
retrieved
17 August 2017
author
Qi Liu
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4884490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26880335%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 June 2020
author name string
Kurt Fredrick
series ordinal
2
1 reference
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Europe PubMed Central
PMC publication ID
4884490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26880335%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 June 2020
language of work or name
English
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publication date
12 February 2016
1 reference
stated in
Europe PubMed Central
PMC publication ID
4884490
retrieved
17 August 2017
published in
Journal of Molecular Biology
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stated in
Europe PubMed Central
PMC publication ID
4884490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26880335%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 June 2020
volume
428
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stated in
Europe PubMed Central
PMC publication ID
4884490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26880335%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 June 2020
issue
10 Pt B
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stated in
Europe PubMed Central
PMC publication ID
4884490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26880335%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 June 2020
page(s)
2146-2164
1 reference
stated in
Europe PubMed Central
PMC publication ID
4884490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26880335%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 June 2020
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Mutations in the intersubunit bridge regions of 16S rRNA affect decoding and subunit-subunit interactions on the 70S ribosome
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Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites
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Missense suppressor mutations in 16S rRNA reveal the importance of helices h8 and h14 in aminoacyl-tRNA selection
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29 September 2017
The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA
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Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation
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29 September 2017
Structures of the ribosome in intermediate states of ratcheting
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29 September 2017
Translation factors direct intrinsic ribosome dynamics during translation termination and ribosome recycling
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29 September 2017
Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome
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29 September 2017
Control of translation initiation involves a factor-induced rearrangement of helix 44 of 16S ribosomal RNA
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29 September 2017
Crystal structure of a translation termination complex formed with release factor RF2
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29 September 2017
Spontaneous intersubunit rotation in single ribosomes.
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29 September 2017
The translational fidelity function of IF3 during transition from the 30 S initiation complex to the 70 S initiation complex
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29 September 2017
The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed -1 ribosomal frameshift
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29 September 2017
A Steric Block in Translation Caused by the Antibiotic Spectinomycin
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29 September 2017
Structural basis for aminoglycoside inhibition of bacterial ribosome recycling
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29 September 2017
Identification of two distinct hybrid state intermediates on the ribosome
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29 September 2017
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29 September 2017
Decoding errors and the involvement of the E-site
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29 September 2017
Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity
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29 September 2017
Structures of the bacterial ribosome at 3.5 A resolution
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29 September 2017
Measurement of internal movements within the 30 S ribosomal subunit using Förster resonance energy transfer
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29 September 2017
Structural insights into translational fidelity
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29 September 2017
The cryo-EM structure of a translation initiation complex from Escherichia coli
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29 September 2017
Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation
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29 September 2017
Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit
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29 September 2017
Locking and unlocking of ribosomal motions
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29 September 2017
Selection of tRNA by the ribosome requires a transition from an open to a closed form
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29 September 2017
The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
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29 September 2017
High resolution structure of the large ribosomal subunit from a mesophilic eubacterium
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29 September 2017
Identification of molecular interactions between P-site tRNA and the ribosome essential for translocation
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29 September 2017
Crystal structure of the ribosome at 5.5 A resolution
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
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29 September 2017
Crystal structure of an initiation factor bound to the 30S ribosomal subunit
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PubMed Central
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29 September 2017
Mutations in helix 27 of the yeast Saccharomyces cerevisiae 18S rRNA affect the function of the decoding center of the ribosome
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29 September 2017
A ratchet-like inter-subunit reorganization of the ribosome during translocation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
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29 September 2017
Release factor RF3 in E.coli accelerates the dissociation of release factors RF1 and RF2 from the ribosome in a GTP-dependent manner
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PubMed Central
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29 September 2017
A model of the translational apparatus based on a three-dimensional reconstruction of the Escherichia coli ribosome
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29 September 2017
Functional Modification of 16S Ribosomal RNA by Kethoxal
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
29 September 2017
Three-dimensional reconstruction of the 70S Escherichia coli ribosome in ice: the distribution of ribosomal RNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
29 September 2017
Unusual resistance of peptidyl transferase to protein extraction procedures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
29 September 2017
How the ribosome hands the A-site tRNA to the P site during EF-G-catalyzed translocation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
27 June 2018
Role of helix 44 of 16S rRNA in the fidelity of translation initiation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
27 June 2018
Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
27 June 2018
A role for the 30S subunit E site in maintenance of the translational reading frame
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
27 June 2018
How initiation factors tune the rate of initiation of protein synthesis in bacteria
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
27 June 2018
Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
27 June 2018
Identification of an RNA-protein bridge spanning the ribosomal subunit interface
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
27 June 2018
Chemical modification of the transfer RNA and polyuridylic acid binding sites of Escherichia coli 30 s ribosomal subunits
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
27 June 2018
Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
27 June 2018
Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
27 June 2018
Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
27 June 2018
Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
27 June 2018
EF-P is essential for rapid synthesis of proteins containing consecutive proline residues
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Real-time assembly landscape of bacterial 30S translation initiation complex.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Distinct functions of elongation factor G in ribosome recycling and translocation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Ribosomal intersubunit bridge B2a is involved in factor-dependent translation initiation and translational processivity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Compensatory evolution reveals functional interactions between ribosomal proteins S12, L14 and L19.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Deletion of a conserved, central ribosomal intersubunit RNA bridge
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
The A-site finger in 23 S rRNA acts as a functional attenuator for translocation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Mutations in the intersubunit bridge regions of 23 S rRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Unfolding of mRNA secondary structure by the bacterial translation initiation complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Identification of nucleotides in E. coli 16S rRNA essential for ribosome subunit association
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Sequence of steps in ribosome recycling as defined by kinetic analysis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
A time-resolved investigation of ribosomal subunit association.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Conformational changes of the small ribosomal subunit during elongation factor G-dependent tRNA-mRNA translocation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Study of the functional interaction of the 900 Tetraloop of 16S ribosomal RNA with helix 24 within the bacterial ribosome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Streptomycin interferes with conformational coupling between codon recognition and GTPase activation on the ribosome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Ribosomal Proteins S12 and S13 Function as Control Elements for Translocation of the mRNA:tRNA Complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
An elongation factor G-induced ribosome rearrangement precedes tRNA-mRNA translocation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Functional studies of the 900 tetraloop capping helix 27 of 16S ribosomal RNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Interaction of translation initiation factor 3 with the 30S ribosomal subunit
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Specific protection of 16 S rRNA by translational initiation factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
The involvement of two distinct regions of 23 S ribosomal RNA in tRNA selection.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 September 2018
Structural rearrangements of the ribosome at the tRNA proofreading step
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4884490
retrieved
4 December 2018
Structure-based energetics of mRNA decoding on the ribosome
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26880335
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Helix 69 in 23S rRNA modulates decoding by wild type and suppressor tRNAs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26880335
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Ribonucleoprotein Particles from Escherichia Coli
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26880335
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26880335
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Kinetic Checkpoint at a Late Step in Translation Initiation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26880335
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.JMB.2016.02.009
1 reference
stated in
Europe PubMed Central
PMC publication ID
4884490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26880335%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 June 2020
PMC publication ID
4884490
1 reference
stated in
Europe PubMed Central
PMC publication ID
4884490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26880335%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 June 2020
PubMed publication ID
26880335
1 reference
stated in
Europe PubMed Central
PMC publication ID
4884490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26880335%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 June 2020
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