(Q36968465)

17 August 2017

1 reference

title

Folding of a universal ribozyme: the ribonuclease P RNA. (English)

1 reference

17 August 2017

0 references

5

Tobin R Sosnick

1 reference

17 August 2017

Nathan J Baird

1

1 reference

17 August 2017

Xing-Wang Fang

series ordinal

2

1 reference

17 August 2017

Narayanan Srividya

series ordinal

3

1 reference

17 August 2017

Tao Pan

series ordinal

4

1 reference

17 August 2017

1 May 2007

1 reference

Quarterly Reviews of Biophysics

17 August 2017

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17 August 2017

40

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17 August 2017

2

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17 August 2017

113-161

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Reversible unfolding of single RNA molecules by mechanical force

17 August 2017

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Defining the inside and outside of a catalytic RNA molecule

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Stabilization of RNA structure by Mg ions. Specific and non-specific effects.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Crystal structure of the specificity domain of ribonuclease P

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Understanding protein hydrogen bond formation with kinetic H/D amide isotope effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Engineered metal binding sites map the heterogeneous folding landscape of a coiled coil

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Discerning the structure and energy of multiple transition states in protein folding using psi-analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

The contribution of metal ions to the structural stability of the large ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Crystal structure of a bacterial ribonuclease P RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Large-scale transcriptional activity in chromosomes 21 and 22

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Perturbed folding kinetics of circularly permuted RNAs with altered topology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Ligand-induced conformational changes observed in single RNA molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

RNA and protein folding: common themes and variations

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Productive folding to the native state by a group II intron ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

A gene expression map for the euchromatic genome of Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Ribonuclease P: unity and diversity in a tRNA processing ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

RNA folding: models and perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Differences in the folding transition state of ubiquitin indicated by phi and psi analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

An early transition state for folding of the P4-P6 RNA domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Crystal structure of a hepatitis delta virus ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Approach to the limit of counterion condensation

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Structural examination of phi-value analysis in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

The rate-limiting step in the folding of a large ribozyme without kinetic traps

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

The thermodynamic origin of the stability of a thermophilic ribozyme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Probing the structure of RNAs in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Exploring the folding landscape of a structured RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Modular construction of a tertiary RNA structure: the specificity domain of the Bacillus subtilis RNase P RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Correlating structural dynamics and function in single ribozyme molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Determining the Mg2+ stoichiometry for folding an RNA metal ion core

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Calculating the electrostatic properties of RNA provides new insights into molecular interactions and function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Contact order, transition state placement and the refolding rates of single domain proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Visualizing the higher order folding of a catalytic RNA molecule

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

RNA folding during transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Characterization of ribonuclease P RNAs from thermophilic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

The Ribonuclease P Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Folding of a large ribozyme during transcription and the effect of the elongation factor NusA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Novel RNA substrates for the ribozyme from Bacillus subtilis ribonuclease P identified by in vitro selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Metal ions and RNA folding: a highly charged topic with a dynamic future

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Single-molecule transition-state analysis of RNA folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Beyond kinetic traps in RNA folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Global identification of human transcribed sequences with genome tiling arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Ion-induced folding of the hammerhead ribozyme: a fluorescence resonance energy transfer study

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Exploration of the transition state for tertiary structure formation between an RNA helix and a large structured RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Site-specific modification of pre-mRNA: the 2'-hydroxyl groups at the splice sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Specific nucleus as the transition state for protein folding: evidence from the lattice model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

A thermodynamic framework for the magnesium-dependent folding of RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

The linkage between magnesium binding and RNA folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

21 January 2018

RNA structure prediction

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Small-angle scattering studies of biological macromolecules in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

A Single-Molecule Study of RNA Catalysis and Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Folding of RNA involves parallel pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

Crystal structure of the RNA component of bacterial ribonuclease P

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

D/H amide kinetic isotope effects reveal when hydrogen bonds form during protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Molecular collapse: the rate-limiting step in two-state cytochrome c folding

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

A magnesium ion core at the heart of a ribozyme domain

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Reduced contact order and RNA folding rates

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Effects of GA mismatches on the structure and thermodynamics of RNA internal loops

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Basis for structural diversity in homologous RNAs

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Determination and analysis of urea and guanidine hydrochloride denaturation curves

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Probing RNA structure and function, by circular permutation

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Mg2+-dependent compaction and folding of yeast tRNAPhe and the catalytic domain of the B. subtilis RNase P RNA determined by small-angle X-ray scattering

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Folding of the four-way RNA junction of the hairpin ribozyme

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Pathway modulation, circular permutation and rapid RNA folding under kinetic control

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Folding mechanisms of group I ribozymes: role of stability and contact order

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Kinetic intermediates trapped by native interactions in RNA folding

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Kinetic analysis of the M1 RNA folding pathway

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Multiple substrate binding sites in the ribozyme from Bacillus subtilis RNase P.

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

The P4-P6 domain directs higher order folding of the Tetrahymena ribozyme core

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

A thermodynamic framework and cooperativity in the tertiary folding of a Mg2+-dependent ribozyme

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

https://api.crossref.org/works/10.1017%2FS0033583507004623

1 reference

7 January 2021

Limiting laws and counterion condensation in polyelectrolyte solutions. V. Further development of the chemical model

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Mg2+-dependent folding of a large ribozyme without kinetic traps

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

The kinetic folding pathway of the Tetrahymena ribozyme reveals possible similarities between RNA and protein folding

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Absorption and circular dichroism spectroscopy of nucleic acid duplexes and triplexes

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Mechanistic insights on the folding of a large ribozyme during transcription

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Application of circular dichroism to study RNA folding transitions

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Absorbance melting curves of RNA.

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

Effect of point mutations on the folding of globular proteins

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004623

7 January 2021

10.1017/S0033583507004623

Identifiers

DOI

1 reference

17 August 2017

1 reference