(Q37309101)

19 August 2017

Identifying lineage effects when controlling for population structure improves power in bacterial association studies (English)

1 reference

19 August 2017

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Nicole Stoesser

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Nicola C. Gordon

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Zamin Iqbal

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Martin J Llewelyn

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

18

A Sarah Walker

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

16

Derrick W Crook

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

15

Tim E Peto

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

6

Timothy M Walker

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

13

Nazir Ismail

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

3

Jane Charlesworth

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

7

Chris C A Spencer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

author name string

Sarah G Earle

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

David A Clifton

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Katie L Hopkins

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

E Grace Smith

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Gil McVean

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Daniel J Wilson

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Neil Woodford

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

publication date

4 April 2016

1 reference

19 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

volume

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

page(s)

16041

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/nmicrobiol.2016.41

13 June 2020

exact match

0 references

cites work

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1 reference

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Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

6 September 2017

1 reference

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Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health

6 September 2017

1 reference

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The advent of genome-wide association studies for bacteria.

6 September 2017

1 reference

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ClonalFrameML: efficient inference of recombination in whole bacterial genomes

6 September 2017

1 reference

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Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriology

6 September 2017

1 reference

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A phylogeny-based sampling strategy and power calculator informs genome-wide associations study design for microbial pathogens.

6 September 2017

1 reference

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Bacterial phylogenetic reconstruction from whole genomes is robust to recombination but demographic inference is not.

6 September 2017

1 reference

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Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

6 September 2017

1 reference

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UniProt: a hub for protein information

6 September 2017

1 reference

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Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes

6 September 2017

1 reference

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Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus.

6 September 2017

1 reference

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Dissecting vancomycin-intermediate resistance in staphylococcus aureus using genome-wide association.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Predicting the virulence of MRSA from its genome sequence

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Trimmomatic: a flexible trimmer for Illumina sequence data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Explaining microbial genomic diversity in light of evolutionary ecology

6 September 2017

1 reference

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SNP-associations and phenotype predictions from hundreds of microbial genomes without genome alignments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Efficient inference of recombination hot regions in bacterial genomes.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Advantages and pitfalls in the application of mixed-model association methods

6 September 2017

1 reference

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

6 September 2017

1 reference

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Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

6 September 2017

1 reference

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Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data.

6 September 2017

1 reference

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DSK: k-mer counting with very low memory usage

6 September 2017

1 reference

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A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance

6 September 2017

1 reference

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Improved linear mixed models for genome-wide association studies

6 September 2017

1 reference

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Fast gapped-read alignment with Bowtie 2

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Five years of GWAS discovery

6 September 2017

1 reference

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Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

6 September 2017

1 reference

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Origins and evolution of antibiotic resistance

6 September 2017

1 reference

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New approaches to population stratification in genome-wide association studies

6 September 2017

1 reference

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Prodigal: prokaryotic gene recognition and translation initiation site identification

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Variance component model to account for sample structure in genome-wide association studies

6 September 2017

1 reference

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BLAST+: architecture and applications

6 September 2017

1 reference

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A genealogical interpretation of principal components analysis

6 September 2017

1 reference

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Bayesian statistical methods for genetic association studies

6 September 2017

1 reference

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The microbial engines that drive Earth's biogeochemical cycles.

6 September 2017

1 reference

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Efficient control of population structure in model organism association mapping

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Principal components analysis corrects for stratification in genome-wide association studies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

A unified mixed-model method for association mapping that accounts for multiple levels of relatedness

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Recombination and the population structures of bacterial pathogens

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

A fast algorithm for joint reconstruction of ancestral amino acid sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Prokaryotes: the unseen majority

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

The Phylogenetic Regression

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Molecular evolution of the Escherichia coli chromosome. III. Clonal frames

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Genome-wide efficient mixed-model analysis for association studies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Genetic basis of resistance to fusidic acid in staphylococci.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

FaST linear mixed models for genome-wide association studies

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Contribution of gene amplification to evolution of increased antibiotic resistance in Salmonella typhimurium

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

A comparison of homologous recombination rates in bacteria and archaea.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Genome-wide association mapping in bacteria?

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5049680

Phylogenies and the Comparative Method: A General Approach to Incorporating Phylogenetic Information into the Analysis of Interspecific Data

2 September 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.41

Estimation of the Medians for Dependent Variables

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.41

Population Structure and Cryptic Relatedness in Genetic Association Studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.41

Tests of statistical hypotheses concerning several parameters when the number of observations is large

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.41

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NMICROBIOL.2016.41

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27572646%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

PubMed publication ID

27572646

1 reference