(Q37459234)

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Antisense oligonucleotide-stimulated transcriptional pausing reveals RNA exit channel specificity of RNA polymerase and mechanistic contributions of NusA and RfaH.

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scholarly article

1 reference

Europe PubMed Central

20 August 2017

Antisense oligonucleotide-stimulated transcriptional pausing reveals RNA exit channel specificity of RNA polymerase and mechanistic contributions of NusA and RfaH. (English)

1 reference

Europe PubMed Central

20 August 2017

3

object named as

Robert Landick

1 reference

Europe PubMed Central

20 August 2017

author name string

Kellie E Kolb

1

1 reference

Europe PubMed Central

20 August 2017

Pyae P Hein

2

1 reference

Europe PubMed Central

20 August 2017

language of work or name

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publication date

25 November 2013

1 reference

Europe PubMed Central

20 August 2017

Journal of Biological Chemistry

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Europe PubMed Central

20 August 2017

289

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Europe PubMed Central

20 August 2017

2

1 reference

Europe PubMed Central

20 August 2017

1151-1163

1 reference

Europe PubMed Central

20 August 2017

describes a project that uses

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3887182/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

Structural basis of transcriptional pausing in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Opening and closing of the bacterial RNA polymerase clamp

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Active site opening and closure control translocation of multisubunit RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

The β subunit gate loop is required for RNA polymerase modification by RfaH and NusG.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

RNA transcript 3'-proximal sequence affects translocation bias of RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

RNA polymerase and transcription elongation factor Spt4/5 complex structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Complete Structural Model of Escherichia coli RNA Polymerase from a Hybrid Approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

The interaction between RNA polymerase and the elongation factor NusA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Translocation by multi-subunit RNA polymerases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

The structure of bacterial RNA polymerase in complex with the essential transcription elongation factor NusA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Two Structurally Independent Domains of E. coli NusG Create Regulatory Plasticity via Distinct Interactions with RNA Polymerase and Regulators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Functional specialization of transcription elongation factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Function of the Bacillus subtilis transcription elongation factor NusG in hairpin-dependent RNA polymerase pausing in the trp leader

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Structural Basis for Converting a General Transcription Factor into an Operon-Specific Virulence Regulator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

The regulatory roles and mechanism of transcriptional pausing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

RNA folding during transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

An extended RNA binding surface through arrayed S1 and KH domains in transcription factor NusA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Folding of a large ribozyme during transcription and the effect of the elongation factor NusA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

The mechanism of intrinsic transcription termination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Interaction of a nascent RNA structure with RNA polymerase is required for hairpin-dependent transcriptional pausing but not for transcript release

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Preferential interaction of the his pause RNA hairpin with RNA polymerase beta subunit residues 904-950 correlates with strong transcriptional pausing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Effects of neutral salts on RNA chain elongation and pausing by Escherichia coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

The structure of an RNA/DNA hybrid: a substrate of the ribonuclease activity of HIV-1 reverse transcriptase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Translation activates the paused transcription complex and restores transcription of the trp operon leader region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Crystallographic structure of an RNA helix: [U(UA)6A]2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Bacterial transcription terminators: the RNA 3'-end chronicles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

A transcription antiterminator constructs a NusA-dependent shield to the emerging transcript

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Nucleic acid duplex stability: influence of base composition on cation effects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

23 August 2017

Cys-pair reporters detect a constrained trigger loop in a paused RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

14 September 2017

Functional regions of the N-terminal domain of the antiterminator RfaH.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

14 September 2017

Direct versus limited-step reconstitution reveals key features of an RNA hairpin-stabilized paused transcription complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

14 September 2017

A rule of seven in Watson-Crick base-pairing of mismatched sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

26 June 2018

The NusA N-terminal domain is necessary and sufficient for enhancement of transcriptional pausing via interaction with the RNA exit channel of RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

26 June 2018

Cooperation between translating ribosomes and RNA polymerase in transcription elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

26 June 2018

Allosteric control of the RNA polymerase by the elongation factor RfaH

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

26 June 2018

Quantitative analysis of transcriptional pausing by Escherichia coli RNA polymerase: his leader pause site as paradigm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

26 June 2018

Role of the RNA polymerase trigger loop in catalysis and pausing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

2 September 2018

Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

2 September 2018

Effects of sodium ions on DNA duplex oligomers: improved predictions of melting temperatures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

2 September 2018

Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

2 September 2018

The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

2 September 2018

Control of intrinsic transcription termination by N and NusA: the basic mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3887182

2 October 2018

Effects of NusA protein on transcription termination in the tryptophan operon of Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.521393

21 January 2018

The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.521393

21 January 2018

Purification, crystallization and initial crystallographic analysis of RNA polymerase holoenzyme fromThermus thermophilus

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.521393

21 January 2018

Co-overexpression of Escherichia coli RNA polymerase subunits allows isolation and analysis of mutant enzymes lacking lineage-specific sequence insertions

1 reference

https://pubmed.ncbi.nlm.nih.gov/24275665

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination

1 reference

https://pubmed.ncbi.nlm.nih.gov/24275665

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pausing and termination of transcription within the early region of bacteriophage T7 DNA in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/24275665

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stability of an RNA secondary structure affects in vitro transcription pausing in the trp operon leader region

1 reference

https://pubmed.ncbi.nlm.nih.gov/24275665

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/24275665

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing

1 reference

https://pubmed.ncbi.nlm.nih.gov/24275665

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/JBC.M113.521393

1 reference

Europe PubMed Central

20 August 2017

1 reference

Europe PubMed Central

20 August 2017

1 reference

Europe PubMed Central

20 August 2017

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