(Q37532074)

20 August 2017

Is HIV short-sighted? Insights from a multistrain nested model (English)

1 reference

20 August 2017

0 references

Christophe Fraser

3

0 references

Katrina A Lythgoe

object named as

Katrina A Lythgoe

series ordinal

1

0 references

Lorenzo Pellis

object named as

Lorenzo Pellis

series ordinal

2

0 references

publication date

13 June 2013

1 reference

20 August 2017

14

1 reference

inferred from page(s)

published in

Evolution

1 reference

20 August 2017

67

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20 August 2017

10

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20 August 2017

2769-2782

1 reference

Previously transmitted HIV-1 strains are preferentially selected during subsequent sexual transmissions

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

The rates of HIV superinfection and primary HIV incidence in a general population in Rakai, Uganda

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptase.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Exploring the complexity of the HIV-1 fitness landscape

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Natural selection. III. Selection versus transmission and the levels of selection

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Assessing predicted HIV-1 replicative capacity in a clinical setting

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Transmission selects for HIV-1 strains of intermediate virulence: a modelling approach

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Characterization of glycosylation profiles of HIV-1 transmitted/founder envelopes by mass spectrometry

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

HIV RNA level in early infection is predicted by viral load in the transmission source

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Common genetic variation and the control of HIV-1 in humans

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

The Evolutionary Dynamics of a Rapidly Mutating Virus within and between Hosts: The Case of Hepatitis C Virus

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Clinical prognostic value of RNA viral load and CD4 cell counts during untreated HIV-1 infection--a quantitative review

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

The tragedy of the commons in evolutionary biology

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Variation in HIV-1 set-point viral load: epidemiological analysis and an evolutionary hypothesis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Low human immunodeficiency virus envelope diversity correlates with low in vitro replication capacity and predicts spontaneous control of plasma viremia after treatment interruptions

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Unselected mutations in the human immunodeficiency virus type 1 genome are mostly nonsynonymous and often deleterious

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Human immunodeficiency virus type 1 fitness is a determining factor in viral rebound and set point in chronic infection

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

A dual infection/competition assay shows a correlation between ex vivo human immunodeficiency virus type 1 fitness and disease progression

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Prognosis in HIV-1 infection predicted by the quantity of virus in plasma

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Nested model reveals potential amplification of an HIV epidemic due to drug resistance.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

A strong case for viral genetic factors in HIV virulence

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Changes in human immunodeficiency virus type 1 fitness and genetic diversity during disease progression

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Short-sighted evolution and the virulence of pathogenic microorganisms

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Dependence of epidemic and population velocities on basic parameters

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Evaluating the importance of within- and between-host selection pressures on the evolution of chronic pathogens.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Evolution of virulence: interdependence, constraints, and selection using nested models

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

HIV-1 pol replication capacity predicts disease progression

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

HLA allele sharing and HIV type 1 viremia in seroconverting Zambians with known transmitting partners

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

Modeling host-parasite coevolution: a nested approach based on mechanistic models

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

AIDS prognosis based on HIV-1 RNA, CD4+ T-cell count and function: markers with reciprocal predictive value over time after seroconversion.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906838

New insights into the evolutionary rate of HIV-1 at the within-host and epidemiological levels

2 September 2018

1 reference

Optimal growth schedule of pathogens within a host: Switching between lytic and latent cycles

21 January 2018

1 reference

HIV RNA levels in transmission sources only weakly predict plasma viral load in recipients

21 January 2018

1 reference

VACCINATION, WITHIN-HOST DYNAMICS, AND VIRULENCE EVOLUTION

21 January 2018

1 reference

A model for coupling within-host and between-host dynamics in an infectious disease

21 January 2018

1 reference

VACCINATION, WITHIN-HOST DYNAMICS, AND VIRULENCE EVOLUTION

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24094332

12 December 2020

inferred from PubMed ID database lookup

Multiple Infections, Immune Dynamics, and the Evolution of Virulence

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24094332

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1111/EVO.12166

1 reference

release_vi2i6fftdbeonflcegngz6avby

20 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/vi2i6fftdbeonflcegngz6avby

24 November 2022

mapped directly with Wikidata item

PMC publication ID

3906838

1 reference

PMC publication ID

3906838

20 August 2017

PubMed publication ID

24094332

1 reference

PMC publication ID

3906838