(Q37785587)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20819242%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

title

Protein functional landscapes, dynamics, allostery: a tortuous path towards a universal theoretical framework (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20819242%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20819242%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Garegin A Papoian

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20819242%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

author name string

Pavel I Zhuravlev

series ordinal

1

1 reference

23 August 2017

Garegin A Papoian

series ordinal

2

1 reference

23 August 2017

1 August 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20819242%20AND%20SRC:MED&resulttype=core&format=json

Quarterly Reviews of Biophysics

13 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20819242%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

volume

43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20819242%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

page(s)

295-332

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20819242%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20819242%20AND%20SRC:MED&resulttype=core&format=json

Tryptophan fluorescence reveals the conformational state of a dynamic loop in recombinant porcine fructose-1,6-bisphosphatase

13 February 2020

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Hidden alternative structures of proline isomerase essential for catalysis

21 January 2018

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Direct observation in solution of a preexisting structural equilibrium for a mutant of the allosteric aspartate transcarbamoylase

21 January 2018

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Localizing frustration in native proteins and protein assemblies

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Structure and dynamics of a molten globular enzyme

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21 January 2018

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Probing the configurational space of a metalloprotein core: an ab initio molecular dynamics study of Duo Ferro 1 binuclear Zn cofactor

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21 January 2018

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21 January 2018

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Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits*

21 January 2018

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21 January 2018

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Exploring the energy landscape of antibody-antigen complexes: protein dynamics, flexibility, and molecular recognition

21 January 2018

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Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle

21 January 2018

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Predicting allosteric communication in myosin via a pathway of conserved residues

21 January 2018

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Visualizing transient events in amino-terminal autoprocessing of HIV-1 protease.

21 January 2018

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Protein folding: then and now

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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A unification of the elastic network model and the Gaussian network model for optimal description of protein conformational motions and fluctuations

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Critical evaluation of simple network models of protein dynamics and their comparison with crystallographic B-factors.

21 January 2018

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NMR analysis of G-protein betagamma subunit complexes reveals a dynamic G(alpha)-Gbetagamma subunit interface and multiple protein recognition modes

21 January 2018

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Speeding molecular recognition by using the folding funnel: the fly-casting mechanism

21 January 2018

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Engineering of stable and fast-folding sequences of model proteins

21 January 2018

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Instantaneous normal modes and the protein glass transition

21 January 2018

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Light-triggered beta-hairpin folding and unfolding

21 January 2018

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Protein-Folding Dynamics: Overview of Molecular Simulation Techniques

21 January 2018

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Ligand recombination and a hierarchy of solvent slaved dynamics: the origin of kinetic phases in hemeproteins

21 January 2018

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On the relationship between folding and chemical landscapes in enzyme catalysis

21 January 2018

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Application of elastic network models to proteins in the crystalline state

21 January 2018

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Structural dynamics in the C-terminal domain of calmodulin at low calcium levels

21 January 2018

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Principal component analysis for protein folding dynamics

21 January 2018

1 reference

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Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

21 January 2018

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Quaternary structure of hemoglobin in solution

21 January 2018

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Inside the chaperonin toolbox: theoretical and computational models for chaperonin mechanism

21 January 2018

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Evolutionarily conserved pathways of energetic connectivity in protein families

21 January 2018

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Metal-coupled folding of Cys2His2 zinc-finger.

21 January 2018

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Quantifying information transfer by protein domains: analysis of the Fyn SH2 domain structure

21 January 2018

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Enzyme millisecond conformational dynamics do not catalyze the chemical step

21 January 2018

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21 January 2018

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Proteins with weakly funneled energy landscapes challenge the classical structure-function paradigm

21 January 2018

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Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion.

21 January 2018

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Theory of protein folding: the energy landscape perspective

21 January 2018

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Toward an outline of the topography of a realistic protein-folding funnel

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583510000119

Theory of protein folding

21 January 2018

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Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations

21 January 2018

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Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms

21 January 2018

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Multi-scale characterization of the energy landscape of proteins with application to the C3D/Efb-C complex

21 January 2018

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Interesting structural and dynamical behaviors exhibited by the AF-6 PDZ domain upon Bcr peptide binding.

21 January 2018

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Enzyme dynamics during catalysis measured by NMR spectroscopy

21 January 2018

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The role of dynamics in allosteric regulation

21 January 2018

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Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: how adequate is native-centric topological modeling?

21 January 2018

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Some factors in the interpretation of protein denaturation

21 January 2018

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21 January 2018

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7 January 2021

Dynamics of proteins: elements and function

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Backbone and side chain dynamics of mutant calmodulin-peptide complexes

21 January 2018

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Ligand-induced global transitions in the catalytic domain of protein kinase A.

21 January 2018

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Can energy landscape roughness of proteins and RNA be measured by using mechanical unfolding experiments?

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Bulk-solvent and hydration-shell fluctuations, similar to alpha- and beta-fluctuations in glasses, control protein motions and functions

21 January 2018

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Mapping GFP structure evolution during proton transfer with femtosecond Raman spectroscopy.

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583510000119

Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Is cooperative oxygen binding by hemoglobin really understood?

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

The role of hydrophobic interactions in initiation and propagation of protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Identification of two distinct inactive conformations of the beta2-adrenergic receptor reconciles structural and biochemical observations

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583510000119

The protein folding problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

From Levinthal to pathways to funnels

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Mapping of two networks of residues that exhibit structural and dynamical changes upon binding in a PDZ domain protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Supercooled liquids and the glass transition

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

An Allosteric Circuit in Caspase-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Apo adenylate kinase encodes its holo form: a principal component and varimax analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Visualizing lowly-populated regions of the free energy landscape of macromolecular complexes by paramagnetic relaxation enhancement

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Dynamic coupling and allosteric behavior in a nonallosteric protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Reassessing a sparse energetic network within a single protein domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Slow Protein Conformational Dynamics from Multiple Experimental Structures: The Helix/Sheet Transition of Arc Repressor

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

Propagation of Dynamic Changes in Barnase Upon Binding of Barstar: An NMR and Computational Study

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

The protein folding network

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

How molten is the molten globule?

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https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Vibrational spectra from atomic fluctuations in dynamics simulations. I. Theory, limitations, and a sample application

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7 January 2021

A pre-steady state analysis of ligand binding to human glucokinase: evidence for a preexisting equilibrium

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7 January 2021

Protein sequence- and pH-dependent hydration probed by terahertz spectroscopy

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Understanding protein folding with energy landscape theory. Part II: Quantitative aspects

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Dominant kinetic paths on biomolecular binding-folding energy landscape

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Exploring the energy landscape of a beta hairpin in explicit solvent

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Dynamics of ligand binding to myoglobin

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

The internal dynamics of globular proteins.

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Protein dynamical transition does not require protein structure

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Instantaneous Normal Mode Analysis of Supercooled Water

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Evidence for a molten globule state as a general intermediate in protein folding

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Pump-probe molecular dynamics as a tool for studying protein motion and long range coupling

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

How adequate are one- and two-dimensional free energy landscapes for protein folding dynamics?

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Free energy self-averaging in protein-sized random heteropolymers

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Two-state allosteric behavior in a single-domain signaling protein

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Protein Folding: A Perspective from Theory and Experiment.

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Pathways for conformational change in nitrogen regulatory protein C from discrete path sampling

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Large-amplitude nonlinear motions in proteins

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

Solvation versus freezing in a heteropolymer globule

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000119

7 January 2021

10.1017/S0033583510000119

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20819242%20AND%20SRC:MED&resulttype=core&format=json

release_5tklua2znzbtpahtugqk34p65e

13 February 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/5tklua2znzbtpahtugqk34p65e

24 November 2022

mapped directly with Wikidata item

1 reference