(Q37808952)

23 August 2017

title

Bioinformatics in bioinorganic chemistry (English)

1 reference

23 August 2017

1 reference

1

Ivano Bertini

1 reference

23 August 2017

Gabriele Cavallaro

2

1 reference

23 August 2017

publication date

29 September 2009

1 reference

23 August 2017

1 reference

23 August 2017

volume

2

1 reference

23 August 2017

issue

1

1 reference

23 August 2017

page(s)

39-51

1 reference

The model organism as a system: integrating 'omics' data sets

23 August 2017

cites work

1 reference

The nature of systems biology

21 January 2018

1 reference

Understanding human metabolic physiology: a genome-to-systems approach

21 January 2018

1 reference

Interactome: gateway into systems biology

21 January 2018

1 reference

Advances in analytical methodology for bioinorganic speciation analysis: metallomics, metalloproteomics and heteroatom-tagged proteomics and metabolomics

21 January 2018

1 reference

Metallomics and metalloproteomics

21 January 2018

1 reference

Computational systems biology

21 January 2018

1 reference

Linking publication, gene and protein data

21 January 2018

1 reference

Automatic annotation of protein function

21 January 2018

1 reference

In silico characterization of proteins: UniProt, InterPro and Integr8.

21 January 2018

1 reference

The rough guide to in silico function prediction, or how to use sequence and structure information to predict protein function

21 January 2018

1 reference

A hint to search for metalloproteins in gene banks

21 January 2018

1 reference

Counting the zinc-proteins encoded in the human genome

21 January 2018

1 reference

Zinc through the three domains of life.

21 January 2018

1 reference

Occurrence of copper proteins through the three domains of life: a bioinformatic approach

21 January 2018

1 reference

The Pfam protein families database

21 January 2018

1 reference

What is a hidden Markov model?

21 January 2018

1 reference

Profile hidden Markov models

21 January 2018

1 reference

characterization of the cytochrome c oxidase assembly factor Cox19 of Saccharomyces cerevisiae

21 January 2018

1 reference

MIA40 is an oxidoreductase that catalyzes oxidative protein folding in mitochondria

21 January 2018

1 reference

The ADAMs family of metalloproteases: multidomain proteins with multiple functions

21 January 2018

1 reference

Astacins, serralysins, snake venom and matrix metalloproteinases exhibit identical zinc-binding environments (HEXXHXXGXXH and Met-turn) and topologies and should be grouped into a common family, the 'metzincins'

21 January 2018

1 reference

The DxDxDG motif for calcium binding: multiple structural contexts and implications for evolution

21 January 2018

1 reference

Protein sequence similarity searches using patterns as seeds

21 January 2018

1 reference

Pfam 10 years on: 10,000 families and still growing

21 January 2018

1 reference

What is a support vector machine?

21 January 2018

1 reference

Computational intelligence approaches for pattern discovery in biological systems

21 January 2018

1 reference

Support vector machines and kernels for computational biology

21 January 2018

1 reference

Identifying cysteines and histidines in transition-metal-binding sites using support vector machines and neural networks.

21 January 2018

1 reference

Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach

21 January 2018

1 reference

Predicting zinc binding at the proteome level

21 January 2018

1 reference

Prediction of zinc-binding sites in proteins from sequence.

21 January 2018

1 reference

Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry

21 January 2018

1 reference

In silico identification of putative metal binding motifs.

21 January 2018

1 reference

Predicting protein function from sequence and structural data.

21 January 2018

1 reference

Predicting protein function from sequence and structure

21 January 2018

1 reference

Predicting protein function by genomic context: quantitative evaluation and qualitative inferences

21 January 2018

1 reference

Prediction of protein function and pathways in the genome era.

21 January 2018

1 reference

Function prediction and protein networks

21 January 2018

1 reference

Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners

21 January 2018

1 reference

Cytochrome c: occurrence and functions

21 January 2018

1 reference

The functions of Sco proteins from genome-based analysis

21 January 2018

1 reference

Structural and Functional Aspects of Metal Sites in Biology

21 January 2018

1 reference

Prediction of protein function from protein sequence and structure

21 January 2018

1 reference

Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions

21 January 2018

1 reference

Dali: a network tool for protein structure comparison

21 January 2018

1 reference

CATH--a hierarchic classification of protein domain structures

21 January 2018

1 reference

From structure to function: approaches and limitations

21 January 2018

1 reference

PROTEIN FAMILIES AND THEIR EVOLUTION—A STRUCTURAL PERSPECTIVE

21 January 2018

1 reference

Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution.

21 January 2018

1 reference

Annotation in three dimensions. PINTS: Patterns in Non-homologous Tertiary Structures

21 January 2018

1 reference

An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis.

21 January 2018

1 reference

Structural analysis of metal sites in proteins: non-heme iron sites as a case study

21 January 2018

1 reference

First-second shell interactions in metal binding sites in proteins: a PDB survey and DFT/CDM calculations.

21 January 2018

1 reference

Metal binding affinity and selectivity in metalloproteins: insights from computational studies.

21 January 2018

1 reference

Desulfoferrodoxin: a modular protein

21 January 2018

1 reference

The impact of structural genomics: expectations and outcomes

21 January 2018

1 reference

Progress and challenges in protein structure prediction

21 January 2018

1 reference

The SWISS-MODEL Repository and associated resources

21 January 2018

1 reference

MODBASE, a database of annotated comparative protein structure models and associated resources.

21 January 2018

1 reference

PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins.

21 January 2018

1 reference

ProFunc: a server for predicting protein function from 3D structure

21 January 2018

1 reference

Evolution of binding sites for zinc and calcium ions playing structural roles

21 January 2018

1 reference

Predicting metal-binding site residues in low-resolution structural models.

21 January 2018

1 reference

Prediction of transition metal-binding sites from apo protein structures.

21 January 2018

1 reference

Discovering structural motifs using a structural alphabet: application to magnesium-binding sites

21 January 2018

1 reference

Robust recognition of zinc binding sites in proteins.

21 January 2018

1 reference

Prediction of water and metal binding sites and their affinities by using the Fold-X force field

21 January 2018

1 reference

Prediction of 3D metal binding sites from translated gene sequences based on remote-homology templates.

21 January 2018

1 reference

Geometry of metal-ligand interactions in proteins

21 January 2018

1 reference

Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination.

21 January 2018

1 reference

Data mining of metal ion environments present in protein structures

21 January 2018

1 reference

Bioinorganic chemistry in the postgenomic era.

21 January 2018

1 reference

Metal ions in biological catalysis: from enzyme databases to general principles

21 January 2018

1 reference

MDB: the Metalloprotein Database and Browser at The Scripps Research Institute

21 January 2018

1 reference

PROMISE: a database of information on prosthetic centres and metal ions in protein active sites

21 January 2018

1 reference

MSDmotif: exploring protein sites and motifs

21 January 2018

1 reference

E-MSD: improving data deposition and structure quality

21 January 2018

1 reference

The evolution of structural databases

21 January 2018

1 reference

COMe: the ontology of bioinorganic proteins

21 January 2018

1 reference

Gene Ontology annotations: what they mean and where they come from

21 January 2018

1 reference

Interaction networks for systems biology

21 January 2018

1 reference

Targeting and tinkering with interaction networks

21 January 2018

1 reference

Network biology: understanding the cell's functional organization

21 January 2018

1 reference

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

21 January 2018

1 reference

Towards a proteome-scale map of the human protein–protein interaction network

21 January 2018

1 reference

High-quality binary protein interaction map of the yeast interactome network

21 January 2018

1 reference

Functional organization of the yeast proteome by systematic analysis of protein complexes

21 January 2018

1 reference

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

21 January 2018

1 reference

Analysis of protein complexes using mass spectrometry

21 January 2018

1 reference

DIP: the database of interacting proteins

21 January 2018

1 reference

MINT: the Molecular INTeraction database

21 January 2018

1 reference

IntAct--open source resource for molecular interaction data

21 January 2018

1 reference

STRING 8--a global view on proteins and their functional interactions in 630 organisms

21 January 2018

1 reference

Network Analysis Tools: from biological networks to clusters and pathways.

21 January 2018

1 reference

From molecular to modular cell biology

21 January 2018

1 reference

The identification of functional modules from the genomic association of genes

21 January 2018

1 reference

Protein complexes and functional modules in molecular networks

21 January 2018

1 reference

Protein-protein interactions: from global to local analyses

21 January 2018

1 reference

Interrogating protein interaction networks through structural biology

21 January 2018

1 reference

Structural systems biology: modelling protein interactions.

21 January 2018

1 reference

Shaping dots and lines: adding modularity into protein interaction networks using structural information

21 January 2018

1 reference

Analyzing protein interaction networks using structural information

21 January 2018

1 reference

Understanding how cells allocate metals using metal sensors and metallochaperones

21 January 2018

1 reference

How do bacterial cells ensure that metalloproteins get the correct metal?

21 January 2018

1 reference

From in vivo to in silico biology and back

21 January 2018

1 reference

The interactome of human EGF/ErbB receptors

21 January 2018

1 reference

The protein network of bacterial motility

21 January 2018

1 reference

Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex

21 January 2018

1 reference

Herpes simplex virus glycoprotein D bound to the human receptor HveA

21 January 2018

1 reference

FAST: a novel protein structure alignment algorithm.

21 January 2018

1 reference

Structural comparison of bacterial and human iron-dependent phenylalanine hydroxylases: similar fold, different stability and reaction rates

21 January 2018

1 reference

The mitochondrial proteome database: MitoP2.

21 January 2018

1 reference

Protein metal binding residue prediction based on neural networks

21 January 2018

1 reference

Metal-MACiE: a database of metals involved in biological catalysis

21 January 2018

1 reference

Computational Prediction of Protein–Protein Interactions

21 January 2018

1 reference

The Atx1-Ccc2 complex is a metal-mediated protein-protein interaction

21 January 2018

1 reference

Non-heme iron through the three domains of life

21 January 2018

1 reference

Comparative Analysis of the ADAM and ADAMTS Families

21 January 2018

1 reference

From Genes to Metalloproteins: A Bioinformatic Approach

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1039/B912156K

1 reference

23 August 2017

1 reference