(Q37939080)

25 August 2017

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title

Models, algorithms and programs for phylogeny reconciliation (English)

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phylogenetic reconciliation

25 August 2017

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0 references

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3

Vincent Daubin

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25 August 2017

4

Vincent Berry

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25 August 2017

1

Jean-Philippe Doyon

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25 August 2017

2

Vincent Ranwez

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25 August 2017

publication date

1 September 2011

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Briefings in Bioinformatics

25 August 2017

published in

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25 August 2017

volume

12

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25 August 2017

issue

5

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25 August 2017

page(s)

392-400

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The multiple gene duplication problem revisited

25 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes

21 January 2018

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Genomes as documents of evolutionary history

21 January 2018

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Reconstruction of ancient molecular phylogeny

21 January 2018

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Maps between Trees and Cladistic Analysis of Historical Associations Among Genes, Organisms, and Areas

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests

21 January 2018

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Phylogenetic identification of lateral genetic transfer events

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

21 January 2018

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Automated ortholog inference from phylogenetic trees and calculation of orthology reliability

21 January 2018

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Orthology prediction at scalable resolution by phylogenetic tree analysis

21 January 2018

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Natural history and evolutionary principles of gene duplication in fungi

21 January 2018

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RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs

21 January 2018

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Assessing performance of orthology detection strategies applied to eukaryotic genomes

21 January 2018

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Phylogenetic and functional assessment of orthologs inference projects and methods

21 January 2018

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Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach

21 January 2018

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Rapid evolutionary innovation during an Archaean genetic expansion.

21 January 2018

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Simultaneous Bayesian gene tree reconstruction and reconciliation analysis

21 January 2018

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A hybrid micro-macroevolutionary approach to gene tree reconstruction.

21 January 2018

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A Bayesian approach for fast and accurate gene tree reconstruction

21 January 2018

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Automatic genome-wide reconstruction of phylogenetic gene trees.

21 January 2018

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Trees within trees: phylogeny and historical associations.

21 January 2018

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On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies.

21 January 2018

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A biologically consistent model for comparing molecular phylogenies.

21 January 2018

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A simple algorithm to infer gene duplication and speciation events on a gene tree.

21 January 2018

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Space of gene/species trees reconciliations and parsimonious models.

21 January 2018

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Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution

21 January 2018

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Optimal gene trees from sequences and species trees using a soft interpretation of parsimony.

21 January 2018

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Reconciliation with non-binary species trees.

21 January 2018

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Bayesian gene/species tree reconciliation and orthology analysis using MCMC.

21 January 2018

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Biological applications of the theory of birth-and-death processes

21 January 2018

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Probabilistic orthology analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

Streamlining and large ancestral genomes in Archaea inferred with a phylogenetic birth-and-death model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

Molecular clocks: four decades of evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes

21 January 2018

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CAFE: a computational tool for the study of gene family evolution

21 January 2018

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The co phylogeny reconstruction problem is NP-complete

21 January 2018

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Simultaneous identification of duplications and lateral gene transfers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

Traversing the tangle: algorithms and applications for cophylogenetic studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

Reconstruction of the cophylogenetic history of related phylogenetic trees with divergence timing information.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

On the computational complexity of the reticulate cophylogeny reconstruction problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

A parameter-adaptive dynamic programming approach for inferring cophylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

Jungles: a new solution to the host/parasite phylogeny reconciliation problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

Birth-death prior on phylogeny and speed dating

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

Jane: a new tool for the cophylogeny reconstruction problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR045

21 January 2018

Identifiers

DOI

10.1093/BIB/BBR045

1 reference

25 August 2017

DBLP publication ID

journals/bib/DoyonRDB11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference