(Q37956564)

25 August 2017

title

On the opportunistic nature of transcription and replication initiation in the metazoan genome (English)

1 reference

25 August 2017

María Gómez

2

0 references

author name string

Joana Sequeira-Mendes

series ordinal

1

1 reference

25 August 2017

language of work or name

English

0 references

publication date

16 November 2011

1 reference

25 August 2017

1 reference

25 August 2017

volume

34

1 reference

25 August 2017

issue

2

1 reference

25 August 2017

page(s)

119-125

1 reference

Transcription: from regulatory ncRNA to incongruent redundancy

25 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

The transcriptional landscape of the mammalian genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

A high-resolution map of transcription in the yeast genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

The antisense transcriptomes of human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

RNA maps reveal new RNA classes and a possible function for pervasive transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

A gene expression map for the euchromatic genome of Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Bidirectional promoters generate pervasive transcription in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Developmentally regulated piRNA clusters implicate MILI in transposon control

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Pervasive transcription constitutes a new level of eukaryotic genome regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Transcribed dark matter: meaning or myth?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Transcriptional noise and the fidelity of initiation by RNA polymerase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

X inactivation and the complexities of silencing a sex chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Divergent transcription from active promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

RNA exosome depletion reveals transcription upstream of active human promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Defining mechanisms that regulate RNA polymerase II transcription in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Functional conservation of multiple elements in yeast chromosomal replicators

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Structural diversity and dynamics of genomic replication origins in Schizosaccharomyces pombe

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genome-wide characterization of fission yeast DNA replication origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genome-wide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Nucleosomes positioned by ORC facilitate the initiation of DNA replication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Conserved nucleosome positioning defines replication origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Coordination of replication and transcription along a Drosophila chromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

An episomal mammalian replicon: sequence-independent binding of the origin recognition complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Sequence-independent DNA binding and replication initiation by the human origin recognition complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Global organization of replication time zones of the mouse genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Global reorganization of replication domains during embryonic stem cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genome-wide studies highlight indirect links between human replication origins and gene regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Transcription initiation activity sets replication origin efficiency in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Preferential localization of human origins of DNA replication at the 5'-ends of expressed genes and at evolutionarily conserved DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Progressive activation of DNA replication initiation in large domains of the immunoglobulin heavy chain locus during B cell development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Dynamics of DNA replication in mammalian somatic cells: nucleotide pool modulates origin choice and interorigin spacing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Replication fork movement sets chromatin loop size and origin choice in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Controlled rereplication at DNA replication origins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Overreplication of short DNA regions during S phase in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

The replicon revisited: an old model learns new tricks in metazoan chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Determinants of nucleosome organization in primary human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

A genomic code for nucleosome positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

The BAH domain facilitates the ability of human Orc1 protein to activate replication origins in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

HBO1 histone acetylase activity is essential for DNA replication licensing and inhibited by Geminin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Chromatin remodeler sucrose nonfermenting 2 homolog (SNF2H) is recruited onto DNA replication origins through interaction with Cdc10 protein-dependent transcript 1 (Cdt1) and promotes pre-replication complex formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Evaluating genome-scale approaches to eukaryotic DNA replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Eukaryotic DNA replication origins: many choices for appropriate answers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genomic specification and epigenetic regulation of eukaryotic DNA replication origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

The many faces of redundancy in DNA replication control

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Failure of origin activation in response to fork stalling leads to chromosomal instability at fragile sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

Genome-wide transcription analyses in rice using tiling microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201100126

21 January 2018

Identifiers

DOI

10.1002/BIES.201100126

1 reference

25 August 2017

1 reference