(Q37967550)

26 August 2017

title

An introduction to the informatics of "next-generation" sequencing (English)

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26 August 2017

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Lincoln D Stein

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26 August 2017

publication date

1 December 2011

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Current Protocols in Bioinformatics

26 August 2017

published in

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26 August 2017

volume

Chapter 11

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26 August 2017

page(s)

Unit 11.1.

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CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

26 August 2017

cites work

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Galaxy CloudMan: delivering cloud compute clusters

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Accurate and comprehensive sequencing of personal genomes

21 January 2018

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Personalized copy number and segmental duplication maps using next-generation sequencing.

21 January 2018

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Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

21 January 2018

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Evaluation of next-generation sequencing software in mapping and assembly

21 January 2018

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rQuant.web: a tool for RNA-Seq-based transcript quantitation

21 January 2018

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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

HMMSplicer: a tool for efficient and sensitive discovery of known and novel splice junctions in RNA-Seq data

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 January 2018

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PeakRanger: a cloud-enabled peak caller for ChIP-seq data

21 January 2018

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Computer science. Cloud computing--what's in it for me as a scientist?

21 January 2018

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SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

21 January 2018

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Alternative expression analysis by RNA sequencing

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

BFAST: an alignment tool for large scale genome resequencing

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

BING: biomedical informatics pipeline for Next Generation Sequencing

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

Circos: an information aesthetic for comparative genomics

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

Searching for SNPs with cloud computing

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

Fast and accurate long-read alignment with Burrows-Wheeler transform

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

The Sequence Alignment/Map format and SAMtools

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

SOAP: short oligonucleotide alignment program

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

Detecting copy number variation with mated short reads

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

Assembly algorithms for next-generation sequencing data

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

The impact of translocations and gene fusions on cancer causation

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

An Eulerian path approach to DNA fragment assembly

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

De novo assembly and analysis of RNA-seq data.

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

SHRiMP: accurate mapping of short color-space reads

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

CloudBurst: highly sensitive read mapping with MapReduce

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

SHREC: a short-read error correction method

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

ABySS: a parallel assembler for short read sequence data

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

The case for cloud computing in genome informatics

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1101S36

10.1002/0471250953.BI1101S36

21 January 2018

Identifiers

DOI

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26 August 2017

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