(Q38063574)

28 August 2017

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title

Exoproteomics: exploring the world around biological systems (English)

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28 August 2017

Jean Armengaud

1

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28 August 2017

Joseph A Christie-Oleza

2

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28 August 2017

Gérémy Clair

3

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28 August 2017

Véronique Malard

4

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28 August 2017

Catherine Duport

5

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28 August 2017

publication date

1 October 2012

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Expert Review of Proteomics

28 August 2017

published in

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28 August 2017

volume

9

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28 August 2017

issue

5

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28 August 2017

page(s)

561-575

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Protein translocation across the bacterial cytoplasmic membrane.

28 August 2017

cites work

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Biogenesis of bacterial inner-membrane proteins

21 January 2018

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Bacterial protein secretion through the translocase nanomachine

21 January 2018

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Transport and proofreading of proteins by the twin-arginine translocation (Tat) system in bacteria

21 January 2018

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21 January 2018

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Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification

21 January 2018

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Cancer secretomics reveal pathophysiological pathways in cancer molecular oncology

21 January 2018

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Unconventional mechanisms of protein transport to the cell surface of eukaryotic cells

21 January 2018

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Exosomes: proteomic insights and diagnostic potential

21 January 2018

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Non-classical protein secretion in bacteria

21 January 2018

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Bacterial outer membrane vesicles and the host-pathogen interaction

21 January 2018

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Staphylococcal major autolysin (Atl) is involved in excretion of cytoplasmic proteins

21 January 2018

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Bacterial virulence in the moonlight: multitasking bacterial moonlighting proteins are virulence determinants in infectious disease

21 January 2018

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Domains in the S-layer protein CbsA of Lactobacillus crispatus involved in adherence to collagens, laminin and lipoteichoic acids and in self-assembly.

21 January 2018

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Protein secretion and surface display in Gram-positive bacteria

21 January 2018

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Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue.

21 January 2018

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Protein export according to schedule: architecture, assembly, and regulation of type III secretion systems from plant- and animal-pathogenic bacteria

21 January 2018

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Arabidopsis cell wall proteome defined using multidimensional protein identification technology.

21 January 2018

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Surfaceome of Leptospira spp.

21 January 2018

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Protein cell surface display in Gram-positive bacteria: from single protein to macromolecular protein structure.

21 January 2018

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The copper responding surfaceome of Methylococccus capsulatus Bath

21 January 2018

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Cell surface proteome of the marine planctomycete Rhodopirellula baltica

21 January 2018

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A cell surfaceome map for immunophenotyping and sorting pluripotent stem cells

21 January 2018

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Proteomic surfaceome analysis of mesothelioma.

21 January 2018

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Recent advances in plant cell wall proteomics

21 January 2018

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Direct detection of bacterial protein secretion using whole colony proteomics

21 January 2018

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Applications of whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbiology

21 January 2018

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Identification of putative exported/secreted proteins in prokaryotic proteomes.

21 January 2018

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Bioinformatic comparison of bacterial secretomes

21 January 2018

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A perfect genome annotation is within reach with the proteomics and genomics alliance.

21 January 2018

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The proteomic future: where mass spectrometry should be taking us.

21 January 2018

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Proteogenomics and systems biology: quest for the ultimate missing parts

21 January 2018

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The whereabouts of 2D gels in quantitative proteomics

21 January 2018

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Global relative and absolute quantitation in microbial proteomics

21 January 2018

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An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

21 January 2018

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Quantitative proteomic analysis of type III secretome of enteropathogenic Escherichia coli reveals an expanded effector repertoire for attaching/effacing bacterial pathogens

21 January 2018

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Selected reaction monitoring applied to proteomics.

21 January 2018

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Targeted proteome investigation via selected reaction monitoring mass spectrometry

21 January 2018

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Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

21 January 2018

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A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

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Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors

21 January 2018

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Proteomic insights into the lifestyle of an environmentally relevant marine bacterium

21 January 2018

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Analytical constraints for the analysis of human cell line secretomes by shotgun proteomics.

21 January 2018

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Isotope dilution strategies for absolute quantitative proteomics

21 January 2018

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Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis

21 January 2018

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Integrated transcriptomic and proteomic analysis of the physiological response of Escherichia coli O157:H7 Sakai to steady-state conditions of cold and water activity stress

21 January 2018

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Genome-wide protein localization prediction strategies for gram negative bacteria

21 January 2018

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MetaLocGramN: A meta-predictor of protein subcellular localization for Gram-negative bacteria

21 January 2018

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Meta-analytic approach to the accurate prediction of secreted virulence effectors in gram-negative bacteria

21 January 2018

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Clinical application of urinary proteomics/peptidomics

21 January 2018

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Affinity prefractionation for MS-based plasma proteomics

21 January 2018

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Advances in proximal fluid proteomics for disease biomarker discovery

21 January 2018

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Temporal proteomic profiling of embryonic stem cell secretome during cardiac and neural differentiation.

21 January 2018

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Secretome proteomics for discovery of cancer biomarkers

21 January 2018

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Reappraisal of serum starvation, the restriction point, G0, and G1 phase arrest points

21 January 2018

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Different changes in protein and phosphoprotein levels result from serum starvation of high-grade glioma and adenocarcinoma cell lines

21 January 2018

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Pathway-based biomarker search by high-throughput proteomics profiling of secretomes

21 January 2018

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Identification of five candidate lung cancer biomarkers by proteomics analysis of conditioned media of four lung cancer cell lines

21 January 2018

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An approach to studying lung cancer-related proteins in human blood.

21 January 2018

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Toward a better analysis of secreted proteins: the example of the myeloid cells secretome

21 January 2018

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From secretome analysis to immunology: chitosan induces major alterations in the activation of dendritic cells via a TLR4-dependent mechanism

21 January 2018

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Identification of Mac-2-binding protein as a putative marker of neuroendocrine tumors from the analysis of cell line secretomes

21 January 2018

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Candidate serological biomarkers for cancer identified from the secretomes of 23 cancer cell lines and the human protein atlas.

21 January 2018

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Lectin capture strategy for effective analysis of cell secretome

21 January 2018

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Secretome compartment is a valuable source of biomarkers for cancer-relevant pathways

21 January 2018

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Advances in proteomic prostate cancer biomarker discovery

21 January 2018

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The cancer cell secretome: a good source for discovering biomarkers?

21 January 2018

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Conditioned media from cell lines: a complementary model to clinical specimens for the discovery of disease-specific biomarkers.

21 January 2018

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Analysis of secretome changes uncovers an autocrine/paracrine component in the modulation of cell proliferation and motility by c-Myc

21 January 2018

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Quantitative neuroproteomics: classical and novel tools for studying neural differentiation and function

21 January 2018

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21 January 2018

The platelet proteome

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Robust signaling networks of the adipose secretome

21 January 2018

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Mechanisms of bacterial pathogenicity

21 January 2018

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Comparative proteomic profiling of culture filtrate proteins of less and highly virulent Francisella tularensis strains

21 January 2018

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Comparative proteome analysis of secretory proteins from pathogenic and nonpathogenic Listeria species

21 January 2018

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Bacillus anthracis secretome time course under host-simulated conditions and identification of immunogenic proteins

21 January 2018

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Assessment of the IgA immunoassay diagnostic potential of the Mycobacterium tuberculosis MT10.3-MPT64 fusion protein in tuberculous pleural fluid

21 January 2018

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Comprehensive analysis of exported proteins from Mycobacterium tuberculosis H37Rv

21 January 2018

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Corynebacterium diphtheriae invasion-associated protein (DIP1281) is involved in cell surface organization, adhesion and internalization in epithelial cells

21 January 2018

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Insight into the core and variant exoproteomes of Listeria monocytogenes species by comparative subproteomic analysis.

21 January 2018

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Proteomics uncovers extreme heterogeneity in theStaphylococcus aureusexoproteome due to genomic plasticity and variant gene regulation

21 January 2018

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Two-dimensional electrophoresis analysis of the extracellular proteome of Bacillus cereus reveals the importance of the PlcR regulon.

21 January 2018

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A comparative study of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis extracellular proteomes

21 January 2018

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Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions.

21 January 2018

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Restricting fermentative potential by proteome remodeling: an adaptive strategy evidenced in Bacillus cereus

21 January 2018

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Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis

21 January 2018

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Discovery of novel secreted virulence factors from Salmonella enterica serovar Typhimurium by proteomic analysis of culture supernatants

21 January 2018

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Analysis of Streptococcus pneumoniae secreted antigens by immuno-proteomic approach.

21 January 2018

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A combined approach for comparative exoproteome analysis of Corynebacterium pseudotuberculosis.

21 January 2018

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Pathogenic potential of Campylobacter ureolyticus

21 January 2018

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Investigating pathogen biology at the level of the proteome

21 January 2018

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Immunoproteomic identification of secretory and subcellular protein antigens and functional evaluation of the secretome fraction of Mycobacterium immunogenum, a newly recognized species of the Mycobacterium chelonae-Mycobacterium abscessus group

21 January 2018

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Quantitative secretomic analysis of Trichoderma reesei strains reveals enzymatic composition for lignocellulosic biomass degradation

21 January 2018

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Label free quantitative proteomic analysis of secretome by Thermobifida fusca on different lignocellulosic biomass.

21 January 2018

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Pathogen proteomes during infection: A basis for infection research and novel control strategies

21 January 2018

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Proteomic approaches to study Staphylococcus aureus pathogenesis

21 January 2018

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Portrait of a pathogen: the Mycobacterium tuberculosis proteome in vivo

21 January 2018

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Helicobacter pylori immunoproteomics in gastric cancer and gastritis of the carcinoma phenotype.

21 January 2018

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Campylobacter proteomics: guidelines, challenges and future perspectives

21 January 2018

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Functional analyses of mycobacterial lipoprotein diacylglyceryl transferase and comparative secretome analysis of a mycobacterial lgt mutant.

21 January 2018

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Quantitative proteomics reveals metabolic and pathogenic properties of Chlamydia trachomatis developmental forms

21 January 2018

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Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria

21 January 2018

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Diversity of the exoproteome of Fusarium graminearum grown on plant cell wall

21 January 2018

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Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoire

21 January 2018

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Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa

21 January 2018

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In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study.

21 January 2018

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Ecological genomics of marine Roseobacters

21 January 2018

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The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis

21 January 2018

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Functional annotation of hypothetical proteins - A review

21 January 2018

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The extracellular proteome of Bacillus licheniformis grown in different media and under different nutrient starvation conditions

21 January 2018

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Diminished exoproteome of Frankia spp. in culture and symbiosis

21 January 2018

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Proteomic analysis of secreted proteins from aseptically grown rice.

21 January 2018

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Proteomic profiling of the planarian Schmidtea mediterranea and its mucous reveals similarities with human secretions and those predicted for parasitic flatworms

21 January 2018

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The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss

21 January 2018

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Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons

21 January 2018

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Genome-wide identification of the subcellular localization of the Escherichia coli B proteome using experimental and computational methods

21 January 2018

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Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods

21 January 2018

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Computational prediction and experimental validation of signal peptide cleavages in the extracellular proteome of a natural microbial community

21 January 2018

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The human proteome project: Current state and future direction.

21 January 2018

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Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins

21 January 2018

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Fungal secretome database: integrated platform for annotation of fungal secretomes

21 January 2018

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FunSecKB: the Fungal Secretome KnowledgeBase

21 January 2018

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High-accuracy prediction of bacterial type III secreted effectors based on position-specific amino acid composition profiles.

21 January 2018

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Prediction of protein subcellular localization

21 January 2018

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ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST.

21 January 2018

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The HMMTOP transmembrane topology prediction server

21 January 2018

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Prediction of lipoprotein signal peptides in Gram-negative bacteria

21 January 2018

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LocateP: genome-scale subcellular-location predictor for bacterial proteins

21 January 2018

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Predicting subcellular localization of proteins using machine-learned classifiers

21 January 2018

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A combined transmembrane topology and signal peptide prediction method

21 January 2018

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Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model

21 January 2018

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Prediction of signal peptides in archaea

21 January 2018

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Combined prediction of Tat and Sec signal peptides with hidden Markov models

21 January 2018

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Predicting subcellular localization via protein motif co-occurrence

21 January 2018

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PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

21 January 2018

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PSORTdb--an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea

21 January 2018

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SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data

21 January 2018

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Computational prediction of type III and IV secreted effectors in gram-negative bacteria

21 January 2018

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Signal-3L: A 3-layer approach for predicting signal peptides

21 January 2018

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SignalP 4.0: discriminating signal peptides from transmembrane regions

21 January 2018

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SOSUI: classification and secondary structure prediction system for membrane proteins

21 January 2018

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Support vector machine approach for protein subcellular localization prediction

21 January 2018

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PrediSi: prediction of signal peptides and their cleavage positions

21 January 2018

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Profiling the Secretome of the Marine BacteriumPseudoalteromonas tunicataUsing Amine-Specific Isobaric Tagging (iTRAQ)

21 January 2018

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21 January 2018

Identifiers

DOI

10.1586/EPR.12.52

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28 August 2017

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