(Q38078794)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23377493%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

review article

1 reference

title

Bioinformatics challenges in de novo transcriptome assembly using short read sequences in the absence of a reference genome sequence (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23377493%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

0 references

1 reference

Elsa Góngora-Castillo

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23377493%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

author name string

C Robin Buell

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23377493%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

language of work or name

1 reference

1 April 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23377493%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

published in

Natural Product Reports

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23377493%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

volume

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23377493%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23377493%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

page(s)

490-500

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23377493%20AND%20SRC:MED&resulttype=core&format=json

454 EST analysis detects genes putatively involved in ginsenoside biosynthesis in Panax ginseng

23 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Transcriptome analysis of Bupleurum chinense focusing on genes involved in the biosynthesis of saikosaponins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Pyrosequencing of the Camptotheca acuminata transcriptome reveals putative genes involved in camptothecin biosynthesis and transport

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Integration of deep transcript and targeted metabolite profiles for eight cultivars of opium poppy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

The transcriptome of the reference potato genome Solanum tuberosum Group Phureja clone DM1-3 516R44.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Single nucleotide polymorphism discovery from wheat next-generation sequence data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Deep EST profiling of developing fenugreek endosperm to investigate galactomannan biosynthesis and its regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

RNA-Seq analysis of developing nasturtium seeds (Tropaeolum majus): identification and characterization of an additional galactosyltransferase involved in xyloglucan biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

De novo sequencing of Hypericum perforatum transcriptome to identify potential genes involved in the biosynthesis of active metabolites

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Exploring the switchgrass transcriptome using second-generation sequencing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Transcriptome analysis of Nicotiana tabacum infected by Cucumber mosaic virus during systemic symptom development

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Next-generation DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Sequencing technologies - the next generation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Accurate whole human genome sequencing using reversible terminator chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

An integrated semiconductor device enabling non-optical genome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Genomic approaches for interrogating the biochemistry of medicinal plant species

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Field guide to next-generation DNA sequencers

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

De novo transcriptome assembly with ABySS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

An Eulerian path approach to DNA fragment assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Comparing de novo genome assembly: the long and short of it

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

How to apply de Bruijn graphs to genome assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Next-generation transcriptome assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Optimization of de novo transcriptome assembly from next-generation sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Cutoffs and k-mers: implications from a transcriptome study in allopolyploid plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Genome-wide atlas of transcription during maize development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Comparative analyses of potato expressed sequence tag libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

UniRef: comprehensive and non-redundant UniProt reference clusters

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

The developmental dynamics of the maize leaf transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Analysis of the Arabidopsis shoot meristem transcriptome during floral transition identifies distinct regulatory patterns and a leucine-rich repeat protein that promotes flowering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

A high-resolution root spatiotemporal map reveals dominant expression patterns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

A hybrid approach for the automated finishing of bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3NP20099J

21 January 2018

Identifiers

DOI

10.1039/C3NP20099J

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23377493%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23377493%20AND%20SRC:MED&resulttype=core&format=json