(Q38090434)

28 August 2017

title

DNA damage emergency: cellular garbage disposal to the rescue? (English)

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28 August 2017

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H R Stone

1

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28 August 2017

J R Morris

series ordinal

2

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28 August 2017

language of work or name

English

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publication date

18 March 2013

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28 August 2017

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28 August 2017

volume

33

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28 August 2017

issue

7

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28 August 2017

page(s)

805-813

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https://scigraph.springernature.com/pub.10.1038/onc.2013.60

28 August 2017

exact match

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cites work

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A ubiquitin ligase complex assembles linear polyubiquitin chains

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Isopeptide linkage between nonhistone and histone 2A polypeptides of chromosomal conjugate-protein A24

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A proteomics approach to understanding protein ubiquitination

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Structural properties of polyubiquitin chains in solution

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Exploring the linkage dependence of polyubiquitin conformations using molecular modeling

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Certain pairs of ubiquitin-conjugating enzymes (E2s) and ubiquitin-protein ligases (E3s) synthesize nondegradable forked ubiquitin chains containing all possible isopeptide linkages.

21 January 2018

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Defining the human deubiquitinating enzyme interaction landscape

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Breaking the chains: structure and function of the deubiquitinases

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The lysine 48 and lysine 63 ubiquitin conjugates are processed differently by the 26 s proteasome

21 January 2018

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Ubiquitinated proteins activate the proteasome by binding to Usp14/Ubp6, which causes 20S gate opening

21 January 2018

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ATP-dependent steps in the binding of ubiquitin conjugates to the 26S proteasome that commit to degradation

21 January 2018

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A proteolytic pathway that recognizes ubiquitin as a degradation signal

21 January 2018

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Association of ataxin-7 with the proteasome subunit S4 of the 19S regulatory complex

21 January 2018

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K63-specific deubiquitination by two JAMM/MPN+ complexes: BRISC-associated Brcc36 and proteasomal Poh1

21 January 2018

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Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation

21 January 2018

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Engineered diubiquitin synthesis reveals Lys29-isopeptide specificity of an OTU deubiquitinase

21 January 2018

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Mass spectrometric and mutational analyses reveal Lys-6-linked polyubiquitin chains catalyzed by BRCA1-BARD1 ubiquitin ligase

21 January 2018

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Differential regulation of JAMM domain deubiquitinating enzyme activity within the RAP80 complex

21 January 2018

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MDC1 is a mediator of the mammalian DNA damage checkpoint

21 January 2018

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Mediator of DNA damage checkpoint protein 1 regulates BRCA1 localization and phosphorylation in DNA damage checkpoint control

21 January 2018

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RNF8 transduces the DNA-damage signal via histone ubiquitylation and checkpoint protein assembly

21 January 2018

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https://api.crossref.org/works/10.1038%2FONC.2013.60

Orchestration of the DNA-damage response by the RNF8 ubiquitin ligase

21 January 2018

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https://api.crossref.org/works/10.1038%2FONC.2013.60

RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins

21 January 2018

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https://api.crossref.org/works/10.1038%2FONC.2013.60

Ubc13/Rnf8 ubiquitin ligases control foci formation of the Rap80/Abraxas/Brca1/Brcc36 complex in response to DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins

21 January 2018

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https://api.crossref.org/works/10.1038%2FONC.2013.60

The RIDDLE syndrome protein mediates a ubiquitin-dependent signaling cascade at sites of DNA damage

21 January 2018

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https://api.crossref.org/works/10.1038%2FONC.2013.60

Abraxas and RAP80 form a BRCA1 protein complex required for the DNA damage response

21 January 2018

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https://api.crossref.org/works/10.1038%2FONC.2013.60

RAD18 transmits DNA damage signalling to elicit homologous recombination repair

21 January 2018

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https://api.crossref.org/works/10.1038%2FONC.2013.60

Nucleotide excision repair-induced H2A ubiquitination is dependent on MDC1 and RNF8 and reveals a universal DNA damage response

21 January 2018

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https://api.crossref.org/works/10.1038%2FONC.2013.60

RNF8- and RNF168-dependent degradation of KDM4A/JMJD2A triggers 53BP1 recruitment to DNA damage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The proteasomal de-ubiquitinating enzyme POH1 promotes the double-strand DNA break response

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

RNF168 ubiquitinates K13-15 on H2A/H2AX to drive DNA damage signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

RAP80 and RNF8, key players in the recruitment of repair proteins to DNA damage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

RAP80 protein is important for genomic stability and is required for stabilizing BRCA1-A complex at DNA damage sites in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

RAP80 targets BRCA1 to specific ubiquitin structures at DNA damage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

RNF8 regulates assembly of RAD51 at DNA double-strand breaks in the absence of BRCA1 and 53BP1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

RAD51-independent inverted-repeat recombination by a strand-annealing mechanism

21 January 2018

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https://api.crossref.org/works/10.1038%2FONC.2013.60

Mediator function of the human Rad51B-Rad51C complex in Rad51/RPA-catalyzed DNA strand exchange

21 January 2018

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https://api.crossref.org/works/10.1038%2FONC.2013.60

Regulation of DNA repair through deSUMOylation and SUMOylation of replication protein A complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

RNF4, a SUMO-targeted ubiquitin E3 ligase, promotes DNA double-strand break repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Sumoylation of MDC1 is important for proper DNA damage response

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

SUMO-targeted ubiquitin E3 ligase RNF4 is required for the response of human cells to DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

RNF4 is required for DNA double-strand break repair in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

A role for the deubiquitinating enzyme USP28 in control of the DNA-damage response

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Fbw7 and Usp28 regulate myc protein stability in response to DNA damage

21 January 2018

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https://api.crossref.org/works/10.1038%2FONC.2013.60

Human USP3 is a chromatin modifier required for S phase progression and genome stability

21 January 2018

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https://api.crossref.org/works/10.1038%2FONC.2013.60

Regulation of cell cycle progression and gene expression by H2A deubiquitination

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Non-canonical inhibition of DNA damage-dependent ubiquitination by OTUB1

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The mechanism of OTUB1-mediated inhibition of ubiquitination

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

OTUB1 Co-opts Lys48-Linked Ubiquitin Recognition to Suppress E2 Enzyme Function

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Molecular basis of Lys-63-linked polyubiquitination inhibition by the interaction between human deubiquitinating enzyme OTUB1 and ubiquitin-conjugating enzyme UBC13.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The Lys63-specific deubiquitinating enzyme BRCC36 is regulated by two scaffold proteins localizing in different subcellular compartments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The Rap80-BRCC36 de-ubiquitinating enzyme complex antagonizes RNF8-Ubc13-dependent ubiquitination events at DNA double strand breaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The AAA-ATPase VCP/p97 promotes 53BP1 recruitment by removing L3MBTL1 from DNA double-strand breaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The ubiquitin-selective segregase VCP/p97 orchestrates the response to DNA double-strand breaks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

A dynamic ubiquitin equilibrium couples proteasomal activity to chromatin remodeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Disassembly of MDC1 foci is controlled by ubiquitin-proteasome-dependent degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Inhibitors of the proteasome suppress homologous DNA recombination in mammalian cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Proteasome function is required for DNA damage response and fanconi anemia pathway activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Proteasome nuclear activity affects chromosome stability by controlling the turnover of Mms22, a protein important for DNA repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Regulation of ErbB2 receptor status by the proteasomal DUB POH1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Ubiquitin depletion as a key mediator of toxicity by translational inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Ku80 removal from DNA through double strand break-induced ubiquitylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Proteasome Involvement in the Repair of DNA Double-Strand Breaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Structural and functional properties of proteasome activator PA28.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

PA200, a nuclear proteasome activator involved in DNA repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Role for proteasome activator PA200 and postglutamyl proteasome activity in genomic stability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Involvement of the nuclear proteasome activator PA28γ in the cellular response to DNA double-strand breaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

S5a promotes protein degradation by blocking synthesis of nondegradable forked ubiquitin chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

A genome-wide screen identifies p97 as an essential regulator of DNA damage-dependent CDT1 destruction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

CDC-48/p97 coordinates CDT-1 degradation with GINS chromatin dissociation to ensure faithful DNA replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Emerging functions of the VCP/p97 AAA-ATPase in the ubiquitin system

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The E3 ligase RNF8 regulates KU80 removal and NHEJ repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

SCF(FBXO22) regulates histone H3 lysine 9 and 36 methylation levels by targeting histone demethylase KDM4A for ubiquitin-mediated proteasomal degradation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

K48-linked ubiquitination and protein degradation regulate 53BP1 recruitment at DNA damage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Sculpting the proteome with AAA(+) proteases and disassembly machines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

A ubiquitin-selective AAA-ATPase mediates transcriptional switching by remodelling a repressor-promoter DNA complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Functional division of substrate processing cofactors of the ubiquitin-selective Cdc48 chaperone

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Cdc48/p97 mediates UV-dependent turnover of RNA Pol II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Enzymatic blockade of the ubiquitin-proteasome pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

VCP, a weak ATPase involved in multiple cellular events, interacts physically with BRCA1 in the nucleus of living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Werner syndrome protein directly binds to the AAA ATPase p97/VCP in an ATP-dependent fashion

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

L3MBTL1 recognition of mono- and dimethylated histones

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Differential regulation of RNF8-mediated Lys48- and Lys63-based poly-ubiquitylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

53BP1 promotes non-homologous end joining of telomeres by increasing chromatin mobility

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Regulation of DNA end joining, resection, and immunoglobulin class switch recombination by 53BP1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Rap80 protein recruitment to DNA double-strand breaks requires binding to both small ubiquitin-like modifier (SUMO) and ubiquitin conjugates

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

RNF4-dependent hybrid SUMO-ubiquitin chains are signals for RAP80 and thereby mediate the recruitment of BRCA1 to sites of DNA damage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

NBA1, a new player in the Brca1 A complex, is required for DNA damage resistance and checkpoint control

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

A comparison of BRCA1 nuclear localization with 14 DNA damage response proteins and domains: identification of specific differences between BRCA1 and 53BP1 at DNA damage-induced foci

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

BRCA1-associated exclusion of 53BP1 from DNA damage sites underlies temporal control of DNA repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

53BP1 loss rescues BRCA1 deficiency and is associated with triple-negative and BRCA-mutated breast cancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

53BP1 inhibits homologous recombination in Brca1-deficient cells by blocking resection of DNA breaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

A selective requirement for 53BP1 in the biological response to genomic instability induced by Brca1 deficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

TRIP12 and UBR5 suppress spreading of chromatin ubiquitylation at damaged chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Identification of mammalian protein quality control factors by high-throughput cellular imaging

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Depletion of DSS1 protein disables homologous recombinational repair in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Dss1 interaction with Brh2 as a regulatory mechanism for recombinational repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Brh2-Dss1 interplay enables properly controlled recombination in Ustilago maydis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Human BRCA2 protein promotes RAD51 filament formation on RPA-covered single-stranded DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Perturbation of DNA repair pathways by proteasome inhibitors corresponds to enhanced chemosensitivity of cells to DNA damage-inducing agents.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Bortezomib-induced "BRCAness" sensitizes multiple myeloma cells to PARP inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Bortezomib plus melphalan and prednisone for initial treatment of multiple myeloma

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The FA/BRCA pathway is involved in melphalan-induced DNA interstrand cross-link repair and accounts for melphalan resistance in multiple myeloma cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

A phase I study evaluating ibritumomab tiuxetan (Zevalin®) in combination with bortezomib (Velcade®) in relapsed/refractory mantle cell and low grade B-cell non-Hodgkin lymphoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Proteasome inhibitors in multiple myeloma: 10 years later

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Targeting the ubiquitin-proteasome pathway with inorganic compounds to fight cancer: a challenge for the future

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Advances in the treatment of relapsed or refractory Hodgkin's lymphoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Proteasome deubiquitinases as novel targets for cancer therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Targeting malignancies with disulfiram (Antabuse): multidrug resistance, angiogenesis, and proteasome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The JAMM motif of human deubiquitinase Poh1 is essential for cell viability

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

A genomic and functional inventory of deubiquitinating enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

A cryptic protease couples deubiquitination and degradation by the proteasome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The 19 S proteasomal subunit POH1 contributes to the regulation of c-Jun ubiquitination, stability, and subcellular localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

De-ubiquitination and ubiquitin ligase domains of A20 downregulate NF-kappaB signalling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The polyglutamine neurodegenerative protein ataxin-3 binds polyubiquitylated proteins and has ubiquitin protease activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Elucidation of ataxin-3 and ataxin-7 function by integrative bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The UCH-L1 gene encodes two opposing enzymatic activities that affect alpha-synuclein degradation and Parkinson's disease susceptibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Editing of ubiquitin conjugates by an isopeptidase in the 26S proteasome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Crystal structure of the de-ubiquitinating enzyme UCH37 (human UCH-L5) catalytic domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

BRCA2 is ubiquitinated in vivo and interacts with USP11, a deubiquitinating enzyme that exhibits prosurvival function in the cellular response to DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Loss of the cylindromatosis tumour suppressor inhibits apoptosis by activating NF-kappaB

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The tumour suppressor CYLD negatively regulates NF-kappaB signalling by deubiquitination

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

CYLD is a deubiquitinating enzyme that negatively regulates NF-kappaB activation by TNFR family members

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The deubiquitinating enzyme USP1 regulates the Fanconi anemia pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Identification of a novel 29-linked polyubiquitin binding protein, Ufd3, using polyubiquitin chain analogues

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The Polycomb Protein Ring1B Generates Self Atypical Mixed Ubiquitin Chains Required for Its In Vitro Histone H2A Ligase Activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

The proteasome is involved in determining differential utilization of double-strand break repair pathways

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Proteasomes and proteasome activator 200 kDa (PA200) accumulate on chromatin in response to ionizing radiation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

S5a/Rpn10, a UIM-protein, as a universal substrate for ubiquitination

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

A series of ubiquitin binding factors connects CDC48/p97 to substrate multiubiquitylation and proteasomal targeting

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Valosin-containing protein phosphorylation at Ser784 in response to DNA damage

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

p97 ATPase, an ATPase involved in membrane fusion, interacts with DNA unwinding factor (DUF) that functions in DNA replication

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

31 March 2020

Proteasome inhibitors

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

Complete subunit architecture of the proteasome regulatory particle

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FONC.2013.60

31 March 2020

Identifiers

DOI

10.1038/ONC.2013.60

1 reference

Dimensions Publication ID

28 August 2017

1026175235

0 references

1 reference