(Q38204607)

31 August 2017

title

Bioimage Informatics in the context of Drosophila research (English)

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31 August 2017

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Stephan Preibisch

3

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F. Jug

series ordinal

1

object named as

Jug F

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31 August 2017

2

Pietzsch T

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31 August 2017

4

Tomancak P

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31 August 2017

language of work or name

English

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publication date

13 April 2014

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31 August 2017

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31 August 2017

volume

68

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31 August 2017

issue

1

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31 August 2017

page(s)

60-73

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The genome sequence of Drosophila melanogaster

31 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Systematic determination of patterns of gene expression during Drosophila embryogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Global analysis of patterns of gene expression during Drosophila embryogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Spatial expression of transcription factors in Drosophila embryonic organ development

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant moment digital representations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

FlyExpress: visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Comparison of embryonic expression within multigene families using the FlyExpress discovery platform reveals more spatial than temporal divergence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Exploring spatial patterns of gene expression from fruit fly embryogenesis on the iPhone

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Automatic image analysis for gene expression patterns of fly embryos

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Automatic recognition and annotation of gene expression patterns of fly embryos

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Automated annotation of Drosophila gene expression patterns using a controlled vocabulary

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A bag-of-words approach for Drosophila gene expression pattern annotation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Drosophila Gene Expression Pattern Annotation Using Sparse Features and Term-Term Interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization images

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Automatic annotation of spatial expression patterns via sparse Bayesian factor models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Automated annotation of gene expression image sequences via non-parametric factor analysis and conditional random fields

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Learning sparse representations for fruit-fly gene expression pattern image annotation and retrieval

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Automated annotation of developmental stages of Drosophila embryos in images containing spatial patterns of expression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

GINI: from ISH images to gene interaction networks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Drosophila gene expression pattern annotation through multi-instance multi-label learning

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Medium-throughput processing of whole mount in situ hybridisation experiments into gene expression domains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Dissecting sources of quantitative gene expression pattern divergence between Drosophila species

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Cellular resolution models for even skipped regulation in the entire Drosophila embryo

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Canalization of gene expression in the Drosophila blastoderm by gap gene cross regulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

GCPReg package for registration of the segmentation gene expression data in Drosophila

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Pipeline for acquisition of quantitative data on segmentation gene expression from confocal images

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Efficient reverse-engineering of a developmental gene regulatory network

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Tools for neuroanatomy and neurogenetics in Drosophila

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A GAL4-driver line resource for Drosophila neurobiology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A resource for manipulating gene expression and analyzing cis-regulatory modules in the Drosophila CNS.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A survey of 6,300 genomic fragments for cis-regulatory activity in the imaginal discs of Drosophila melanogaster

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

BrainAligner: 3D registration atlases of Drosophila brains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

The Virtual Insect Brain protocol: creating and comparing standardized neuroanatomy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Web tools for large-scale 3D biological images and atlases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

The Virtual Fly Brain browser and query interface

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Globally optimal stitching of tiled 3D microscopic image acquisitions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Fiji: an open-source platform for biological-image analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

XuvTools: free, fast and reliable stitching of large 3D datasets.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

TeraStitcher - a tool for fast automatic 3D-stitching of teravoxel-sized microscopy images.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Exploring the third dimension: volume electron microscopy comes of age.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Drosophila brain development: closing the gap between a macroarchitectural and microarchitectural approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A visual motion detection circuit suggested by Drosophila connectomics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Semi-automated reconstruction of neural circuits using electron microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Distinctive Image Features from Scale-Invariant Keypoints

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Random sample consensus: a paradigm for model fitting with applications to image analysis and automated cartography

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Elastic volume reconstruction from series of ultra-thin microscopy sections.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

TrakEM2 software for neural circuit reconstruction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Array tomography: a new tool for imaging the molecular architecture and ultrastructure of neural circuits

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Tilted view reconstruction in optical microscopy. Three-dimensional reconstruction of Drosophila melanogaster embryo nuclei

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Optical sectioning deep inside live embryos by selective plane illumination microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Imaging morphogenesis: technological advances and biological insights

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A toolkit for high-throughput, cross-species gene engineering in Drosophila

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Software for bead-based registration of selective plane illumination microscopy data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Multi-view image fusion improves resolution in three-dimensional microscopy.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Wavelet-based image fusion in multi-view three-dimensional microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Maximum likelihood reconstruction for emission tomography

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Multiview deblurring for 3-D images from light-sheet-based fluorescence microscopy.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Efficient Bayesian-based multiview deconvolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

OpenSPIM: an open-access light-sheet microscopy platform.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

OpenSpinMicroscopy: an open-source integrated microscopy platform.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Multiview light-sheet microscope for rapid in toto imaging.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Noninvasive imaging beyond the diffraction limit of 3D dynamics in thickly fluorescent specimens

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

CATMAID: collaborative annotation toolkit for massive amounts of image data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Mechanical control of morphogenesis by Fat/Dachsous/Four-jointed planar cell polarity pathway

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Towards semi-automatic reconstruction of neural circuits

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Neuron geometry extraction by perceptual grouping in ssTEM images

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Feature Detection with Automatic Scale Selection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

In vivo modulation of morphogenetic movements in Drosophila embryos with femtosecond laser pulses.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Survey over image thresholding techniques and quantitative performance evaluation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

An experimental comparison of min-cut/max-flow algorithms for energy minimization in vision.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Snakes: Active contour models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Ilastik: Interactive learning and segmentation toolkit

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Objective comparison of particle tracking methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A New Approach to Linear Filtering and Prediction Problems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Multiple Hypothesis Tracking for Cluttered Biological Image Sequences

7 January 2021

2 references

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

7 January 2021

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

inferred from DOI database lookup

7 January 2021

based on heuristic

Robust single-particle tracking in live-cell time-lapse sequences

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Coupled minimum-cost flow cell tracking for high-throughput quantitative analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Cell population tracking and lineage construction with spatiotemporal context

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Cell flow reorients the axis of planar polarity in the wing epithelium of Drosophila.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

The case for open computer programs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Research priorities. Shining light into black boxes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Current challenges in open-source bioimage informatics.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Biological imaging software tools

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

BioImageXD: an open, general-purpose and high-throughput image-processing platform.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Endrov: an integrated platform for image analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

EBImage--an R package for image processing with applications to cellular phenotypes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

CellProfiler: image analysis software for identifying and quantifying cell phenotypes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

NIH Image to ImageJ: 25 years of image analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A 3D digital atlas of C. elegans and its application to single-cell analyses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Extensible visualization and analysis for multidimensional images using Vaa3D.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Automatic 3D neuron tracing using all-path pruning

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A call for bioimaging software usability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

A cross disciplinary study of link decay and the effectiveness of mitigation techniques

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

KNIME - the Konstanz information miner: version 2.0 and beyond

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Why bioimage informatics matters

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Metadata matters: access to image data in the real world

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

ImgLib2--generic image processing in Java

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Computerized video analysis of social interactions in mice.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Profiling by image registration reveals common origin of annelid mushroom bodies and vertebrate pallium

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

Distribution, classification, and development ofDrosophila glial cells in the late embryonic and early larval ventral nerve cord.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.04.004

10.1016/J.YMETH.2014.04.004

7 January 2021

Identifiers

DOI

1 reference

31 August 2017

1 reference