(Q38254752)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25260907%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

title

Beyond genome sequencing: lineage tracking with barcodes to study the dynamics of evolution, infection, and cancer (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25260907%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

main subject

whole genome sequencing

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25260907%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

author name string

Sasha F Levy

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25260907%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

publication date

28 September 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25260907%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25260907%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

volume

104

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25260907%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

issue

6 Pt A

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25260907%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

page(s)

417-430

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25260907%20AND%20SRC:MED&resulttype=core&format=json

Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment

20 February 2020

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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A novel role for site-specific recombination in maintenance of bacterial replicons

7 January 2021

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7 January 2021

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Cre recombinase: The universal reagent for genome tailoring

7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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inferred from DOI database lookup

7 January 2021

based on heuristic

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Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations

7 January 2021

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Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations

7 January 2021

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Adaptive divergence in experimental populations of Pseudomonas fluorescens. V. Insight into the niche specialist fuzzy spreader compels revision of the model Pseudomonas radiation

7 January 2021

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Founder niche constrains evolutionary adaptive radiation

7 January 2021

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Bacterial recombination promotes the evolution of multi-drug-resistance in functionally diverse populations.

7 January 2021

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Gene surfing in expanding populations.

7 January 2021

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Diminishing Returns from Mutation Supply Rate in Asexual Populations

7 January 2021

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Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme

7 January 2021

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Diminishing returns epistasis among beneficial mutations decelerates adaptation

7 January 2021

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Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome

7 January 2021

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Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

7 January 2021

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The human microbiome: at the interface of health and disease

7 January 2021

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Diversity, stability and resilience of the human gut microbiota

7 January 2021

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Dynamics and associations of microbial community types across the human body

7 January 2021

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7 January 2021

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7 January 2021

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Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

7 January 2021

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Advancing our understanding of the human microbiome using QIIME

7 January 2021

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Denoising PCR-amplified metagenome data

7 January 2021

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Unifying the epidemiological and evolutionary dynamics of pathogens

7 January 2021

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Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance

7 January 2021

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Evolution of virulence in emerging epidemics

7 January 2021

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Genomic insights into tuberculosis

7 January 2021

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A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus

7 January 2021

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A predictive fitness model for influenza

7 January 2021

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Quantifying selection against synonymous mutations in HIV-1 env evolution.

7 January 2021

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The global circulation of seasonal influenza A (H3N2) viruses

7 January 2021

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Evolution of MRSA during hospital transmission and intercontinental spread

7 January 2021

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Population structure of a hybrid clonal group of methicillin-resistant Staphylococcus aureus, ST239-MRSA-III.

7 January 2021

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Subpopulations of Staphylococcus aureus clonal complex 121 are associated with distinct clinical entities

7 January 2021

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Evolutionary dynamics of bacteria in a human host environment

7 January 2021

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Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes.

7 January 2021

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Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes.

7 January 2021

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Association of Torulopsis glabrata infections with fluconazole prophylaxis in neutropenic bone marrow transplant patients

7 January 2021

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Fluconazole susceptibilities of Candida species and distribution of species recovered from blood cultures over a 5-year period

7 January 2021

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In vitro susceptibilities of clinical yeast isolates to three antifungal agents determined by the microdilution method

7 January 2021

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Variation in Candida spp. distribution and antifungal resistance rates among bloodstream infection isolates by patient age: report from the SENTRY Antimicrobial Surveillance Program (2008-2009).

7 January 2021

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Wild-type MIC distributions and epidemiological cutoff values for amphotericin B, flucytosine, and itraconazole and Candida spp. as determined by CLSI broth microdilution

7 January 2021

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FKS mutations and elevated echinocandin MIC values among Candida glabrata isolates from U.S. population-based surveillance

7 January 2021

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Species identification and antifungal susceptibility testing of Candida bloodstream isolates from population-based surveillance studies in two U.S. cities from 2008 to 2011.

7 January 2021

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Reduced Candida glabrata susceptibility secondary to an FKS1 mutation developed during candidemia treatment

7 January 2021

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Development of caspofungin resistance following prolonged therapy for invasive candidiasis secondary to Candida glabrata infection.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Acquisition of flucytosine, azole, and caspofungin resistance in Candida glabrata bloodstream isolates serially obtained from a hematopoietic stem cell transplant recipient.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

FKS2 mutations associated with decreased echinocandin susceptibility of Candida glabrata following anidulafungin therapy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Novel FKS mutations associated with echinocandin resistance in Candida species

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Caspofungin-non-susceptible Candida isolates in cancer patients

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Characterisation of breakthrough invasive mycoses in echinocandin recipients: an evidence-based review

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Cancer in light of experimental evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Evolution of the cancer genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Evolutionary dynamics of carcinogenesis and why targeted therapy does not work.

7 January 2021

1 reference

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7 January 2021

1 reference

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Future medical applications of single-cell sequencing in cancer

7 January 2021

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Tumour evolution inferred by single-cell sequencing

7 January 2021

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7 January 2021

Single-cell sequencing

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A constant rate of spontaneous mutation in DNA-based microbes

7 January 2021

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Morphometry and cytodiagnosis of breast lesions

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Spread of human cancer cells occurs with probabilities indicative of a nongenetic mechanism

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Impact of deleterious passenger mutations on cancer progression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Progress and problems with the use of viral vectors for gene therapy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Genome-wide analysis of retroviral DNA integration

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

TALENs: a widely applicable technology for targeted genome editing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

RNA-guided human genome engineering via Cas9

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Efficient genome editing in zebrafish using a CRISPR-Cas system

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Multiplex genome engineering using CRISPR/Cas systems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

The magical touch: genome targeting in epidermal stem cells induced by tamoxifen application to mouse skin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Germline transmission and tissue-specific expression of transgenes delivered by lentiviral vectors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Genome-wide in situ exon capture for selective resequencing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.09.005

10.1016/J.YGENO.2014.09.005

7 January 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25260907%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference