(Q38255274)

1 September 2017

1 reference

title

Microbial genome-enabled insights into plant-microorganism interactions (English)

1 reference

1 September 2017

author

Alice Carolyn McHardy

series ordinal

2

object named as

Alice C McHardy

1 reference

1 September 2017

David S Guttman

1

1 reference

1 September 2017

Paul Schulze-Lefert

series ordinal

3

1 reference

1 September 2017

publication date

30 September 2014

1 reference

1 September 2017

published in

Nature Reviews Genetics

1 reference

1 September 2017

volume

15

1 reference

1 September 2017

issue

12

1 reference

1 September 2017

page(s)

797-813

1 reference

https://scigraph.springernature.com/pub.10.1038/nrg3748

1 September 2017

exact match

0 references

cites work

The plant immune system

1 reference

Plant immunity: towards an integrated view of plant-pathogen interactions

21 January 2018

1 reference

Of PAMPs and effectors: the blurred PTI-ETI dichotomy

21 January 2018

1 reference

A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors

21 January 2018

1 reference

Pep-13, a plant defense-inducing pathogen-associated pattern from Phytophthora transglutaminases.

21 January 2018

1 reference

Tomato immune receptor Ve1 recognizes effector of multiple fungal pathogens uncovered by genome and RNA sequencing

21 January 2018

1 reference

Receptor-like kinase SOBIR1/EVR interacts with receptor-like proteins in plant immunity against fungal infection

21 January 2018

1 reference

Tomato Cf resistance proteins mediate recognition of cognate homologous effectors from fungi pathogenic on dicots and monocots.

21 January 2018

1 reference

NLR functions in plant and animal immune systems: so far and yet so close

21 January 2018

1 reference

Terrific protein traffic: the mystery of effector protein delivery by filamentous plant pathogens

21 January 2018

1 reference

External lipid PI3P mediates entry of eukaryotic pathogen effectors into plant and animal host cells.

21 January 2018

1 reference

How do filamentous pathogens deliver effector proteins into plant cells?

21 January 2018

1 reference

The targeting of plant cellular systems by injected type III effector proteins

21 January 2018

1 reference

Structure and functions of the bacterial microbiota of plants

21 January 2018

1 reference

Microbial life in the phyllosphere.

21 January 2018

1 reference

Current Status of the Gene-For-Gene Concept

21 January 2018

1 reference

Cloned avirulence gene of Pseudomonas syringae pv. glycinea determines race-specific incompatibility on Glycine max (L.) Merr

21 January 2018

1 reference

Molecular characterization and nucleic acid sequence of an avirulence gene from race 6 of Pseudomonas syringae pv. glycinea

21 January 2018

1 reference

A functional screen for the type III (Hrp) secretome of the plant pathogen Pseudomonas syringae.

21 January 2018

1 reference

A high-throughput, near-saturating screen for type III effector genes from Pseudomonas syringae

21 January 2018

1 reference

A genetic screen to isolate type III effectors translocated into pepper cells during Xanthomonas infection

21 January 2018

1 reference

Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factor

21 January 2018

1 reference

Pseudomonas syringae type III secretion system targeting signals and novel effectors studied with a Cya translocation reporter

21 January 2018

1 reference

Whole-genome expression profiling defines the HrpL regulon of Pseudomonas syringae pv. tomato DC3000, allows de novo reconstruction of the Hrp cis clement, and identifies novel coregulated genes

21 January 2018

1 reference

Genomewide identification of proteins secreted by the Hrp type III protein secretion system of Pseudomonas syringae pv. tomato DC3000

21 January 2018

1 reference

Bioinformatics-enabled identification of the HrpL regulon and type III secretion system effector proteins of Pseudomonas syringae pv. phaseolicola 1448A.

21 January 2018

1 reference

Sequence-based prediction of type III secreted proteins

21 January 2018

1 reference

Computational prediction of type III secreted proteins from gram-negative bacteria

21 January 2018

1 reference

Prediction of type III secretion signals in genomes of gram-negative bacteria

21 January 2018

1 reference

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

21 January 2018

1 reference

Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000

21 January 2018

1 reference

Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition

21 January 2018

1 reference

Closing the circle on the discovery of genes encoding Hrp regulon members and type III secretion system effectors in the genomes of three model Pseudomonas syringae strains

21 January 2018

1 reference

Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates

21 January 2018

1 reference

High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance

21 January 2018

1 reference

Xanthomonas AvrBs3 family-type III effectors: discovery and function

21 January 2018

1 reference

Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut

21 January 2018

1 reference

Convergent evolution of phytopathogenic pseudomonads onto hazelnut

21 January 2018

1 reference

Phytoplasmas: bacteria that manipulate plants and insects.

21 January 2018

1 reference

AY-WB phytoplasma secretes a protein that targets plant cell nuclei.

21 January 2018

1 reference

Dramatic transcriptional changes in an intracellular parasite enable host switching between plant and insect

21 January 2018

1 reference

Phytoplasma protein effector SAP11 enhances insect vector reproduction by manipulating plant development and defense hormone biosynthesis

21 January 2018

1 reference

Changing concepts in the systematics of bacterial nitrogen-fixing legume symbionts.

21 January 2018

1 reference

Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

21 January 2018

1 reference

Establishing nitrogen-fixing symbiosis with legumes: how many rhizobium recipes?

21 January 2018

1 reference

Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia.

21 January 2018

1 reference

Rhizobial secreted proteins as determinants of host specificity in the rhizobium-legume symbiosis

21 January 2018

1 reference

Identification and functional analysis of type III effector proteins in Mesorhizobium loti

21 January 2018

1 reference

Hijacking of leguminous nodulation signaling by the rhizobial type III secretion system

21 January 2018

1 reference

Oomycetes, effectors, and all that jazz

21 January 2018

1 reference

Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen

21 January 2018

1 reference

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

21 January 2018

1 reference

Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts

21 January 2018

1 reference

Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana

21 January 2018

1 reference

The genome sequence and effector complement of the flax rust pathogen Melampsora lini

21 January 2018

1 reference

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

21 January 2018

1 reference

Genome evolution following host jumps in the Irish potato famine pathogen lineage.

21 January 2018

1 reference

Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison

21 January 2018

1 reference

The wheat powdery mildew genome shows the unique evolution of an obligate biotroph

21 January 2018

1 reference

Structure and evolution of barley powdery mildew effector candidates

21 January 2018

1 reference

The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion

21 January 2018

1 reference

The accessory genome as a cradle for adaptive evolution in pathogens

21 January 2018

1 reference

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

21 January 2018

1 reference

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

21 January 2018

1 reference

Evolution of linked avirulence effectors in Leptosphaeria maculans is affected by genomic environment and exposure to resistance genes in host plants

21 January 2018

1 reference

Insights into the phylogeny and coding potential of microbial dark matter

21 January 2018

1 reference

Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes.

21 January 2018

1 reference

The population genetics of dN/dS

21 January 2018

1 reference

The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

21 January 2018

1 reference

Two distinct secretion systems facilitate tissue invasion by the rice blast fungus Magnaporthe oryzae

21 January 2018

1 reference

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

21 January 2018

1 reference

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

21 January 2018

1 reference

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

21 January 2018

1 reference

Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica

21 January 2018

1 reference

Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes

21 January 2018

1 reference

Emergence of a new disease as a result of interspecific virulence gene transfer

21 January 2018

1 reference

Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions

21 January 2018

1 reference

Association genetics reveals three novel avirulence genes from the rice blast fungal pathogen Magnaporthe oryzae

21 January 2018

1 reference

Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola

21 January 2018

1 reference

Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species

21 January 2018

1 reference

Bacterial adaptation to life in association with plants - A proteomic perspective from culture to in situ conditions

21 January 2018

1 reference

Exploring prokaryotic diversity in the genomic era

21 January 2018

1 reference

Metagenomics: genomic analysis of microbial communities

21 January 2018

1 reference

Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants

21 January 2018

1 reference

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

21 January 2018

1 reference

Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?

21 January 2018

1 reference

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

21 January 2018

1 reference

An ABC transporter mutation alters root exudation of phytochemicals that provoke an overhaul of natural soil microbiota

21 January 2018

1 reference

Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior.

21 January 2018

1 reference

The rhizosphere microbiome and plant health.

21 January 2018

1 reference

The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms.

21 January 2018

1 reference

Deciphering the rhizosphere microbiome for disease-suppressive bacteria

21 January 2018

1 reference

Diversity and heritability of the maize rhizosphere microbiome under field conditions

21 January 2018

1 reference

Defining the core Arabidopsis thaliana root microbiome

21 January 2018

1 reference

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota.

21 January 2018

1 reference

Bacterial community assembly based on functional genes rather than species

21 January 2018

1 reference

Characterization of metaproteomics in crop rhizospheric soil

21 January 2018

1 reference

Comparative metaproteomic analysis on consecutively Rehmannia glutinosa-monocultured rhizosphere soil

21 January 2018

1 reference

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

21 January 2018

1 reference

Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types

21 January 2018

1 reference

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

21 January 2018

1 reference

Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons

21 January 2018

1 reference

Host genotype shapes the foliar fungal microbiome of balsam poplar (Populus balsamifera).

21 January 2018

1 reference

Geographical location determines the population structure in phyllosphere microbial communities of a salt-excreting desert tree

21 January 2018

1 reference

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere

21 January 2018

1 reference

Distinctive phyllosphere bacterial communities in tropical trees

21 January 2018

1 reference

Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere

21 January 2018

1 reference

The microbial Phyllogeography of the carnivorous plant Sarracenia alata

21 January 2018

1 reference

The carnivorous pale pitcher plant harbors diverse, distinct, and time-dependent bacterial communities

21 January 2018

1 reference

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

21 January 2018

1 reference

Bacterial succession on the leaf surface: a novel system for studying successional dynamics.

21 January 2018

1 reference

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

21 January 2018

1 reference

Phyllosphere microbiology with special reference to diversity and plant genotype.

21 January 2018

1 reference

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

21 January 2018

1 reference

Genetic mapping in human disease

21 January 2018

1 reference

Genome-wide association studies for common diseases and complex traits

21 January 2018

1 reference

What triggers grass endophytes to switch from mutualism to pathogenism?

21 January 2018

1 reference

A synthetic community approach reveals plant genotypes affecting the phyllosphere microbiota

21 January 2018

1 reference

Culturing a plant microbiome community at the cross-Rhodes.

21 January 2018

1 reference

Next-generation DNA sequencing methods

21 January 2018

1 reference

Pathogenomics of fungal plant parasites: what have we learnt about pathogenesis?

21 January 2018

1 reference

The Human Microbiome Project in 2011 and beyond

21 January 2018

1 reference

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

21 January 2018

1 reference

Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome

21 January 2018

1 reference

Genotypic microbial community profiling: a critical technical review

21 January 2018

1 reference

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 January 2018

1 reference

QIIME allows analysis of high-throughput community sequencing data

21 January 2018

1 reference

Removing noise from pyrosequenced amplicons

21 January 2018

1 reference

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

21 January 2018

1 reference

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

21 January 2018

1 reference

Ray Meta: scalable de novo metagenome assembly and profiling.

21 January 2018

1 reference

MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies

21 January 2018

1 reference

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.

21 January 2018

1 reference

A simple, fast, and accurate method of phylogenomic inference

21 January 2018

1 reference

Metagenomic species profiling using universal phylogenetic marker genes

21 January 2018

1 reference

Metagenomic microbial community profiling using unique clade-specific marker genes

21 January 2018

1 reference

Taxonomic metagenome sequence assignment with structured output models

21 January 2018

1 reference

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

21 January 2018

1 reference

Integrative analysis of environmental sequences using MEGAN4

21 January 2018

1 reference

Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes.

21 January 2018

1 reference

IMG/M: the integrated metagenome data management and comparative analysis system

21 January 2018

1 reference

BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing

21 January 2018

1 reference

IDBA-MT: de novo assembler for metatranscriptomic data generated from next-generation sequencing technology.

21 January 2018

1 reference

Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

Fast and accurate long-read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

Hitchhiking mapping--functional genomics from the population genetics perspective

21 January 2018

1 reference

Identification of innate immunity elicitors using molecular signatures of natural selection

21 January 2018

1 reference

Toward an integrated genetic epidemiology of parasitic protozoa and other pathogens

21 January 2018

1 reference

Linkage disequilibrium mapping: the role of population history, size, and structure

21 January 2018

1 reference

Orthologs, paralogs, and evolutionary genomics

21 January 2018

1 reference

Unexpected diversity during community succession in the apple flower microbiome

21 January 2018

1 reference

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

21 January 2018

1 reference

Flagellin perception varies quantitatively in Arabidopsis thaliana and its relatives

21 January 2018

1 reference

Specific elicitors of plant phytoalexin production: detenninants of race specificity in pathogens?

21 January 2018

1 reference

Genome evolution in filamentous plant pathogens: why bigger can be better

31 March 2020

1 reference

A Secreted Fungal Effector of Glomus intraradices Promotes Symbiotic Biotrophy

31 March 2020

1 reference

Meiotic behaviour of the minichromosome in the phytopathogenic ascomycete Leptosphaeria maculans

31 March 2020

1 reference

The Probable Center of Origin of Fusarium oxysporum f. sp. lycopersici VCG 0033

31 March 2020

1 reference

31 March 2020

1 reference

Linking fungal communities in roots, rhizosphere, and soil to the health status of Pisum sativum

31 March 2020

1 reference

Who's who in the plant root microbiome?

31 March 2020

1 reference

Impact of organic and conventional management on the phyllosphere microbial ecology of an apple crop

31 March 2020

1 reference

The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine

31 March 2020

1 reference

A restriction fragment length polymorphism map and electrophoretic karyotype of the fungal maize pathogen Cochliobolus heterostrophus.

31 March 2020

1 reference

12 December 2020

Sexual reproduction plays a major role in the genetic structure of populations of the fungus Mycosphaerella graminicola

1 reference

12 December 2020

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

1 reference

12 December 2020

hrp genes of Pseudomonas solanacearum are homologous to pathogenicity determinants of animal pathogenic bacteria and are conserved among plant pathogenic bacteria

1 reference

12 December 2020

Determinants of pathogenicity in Xanthomonas campestris pv. vesicatoria are related to proteins involved in secretion in bacterial pathogens of animals

1 reference

12 December 2020

A conditionally dispensable chromosome controls host-specific pathogenicity in the fungal plant pathogen Alternaria alternata.

1 reference

12 December 2020

A population genomic approach to map recent positive selection in model species

1 reference

12 December 2020

Gene cluster of Pseudomonas syringae pv. "phaseolicola" controls pathogenicity of bean plants and hypersensitivity of nonhost plants

1 reference

12 December 2020

Meiotic behavior of a supernumerary chromosome in Magnaporthe oryzae

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRG3748

1 reference

Dimensions Publication ID

1 September 2017

1034600115

0 references

1 reference