(Q38258263)

1 September 2017

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title

Evolutionary dynamics of coding and non-coding transcriptomes (English)

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1 September 2017

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Evolutionary dynamics

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1

Anamaria Necsulea

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1 September 2017

Henrik Kaessmann

2

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1 September 2017

9 October 2014

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1 September 2017

Nature Reviews Genetics

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1 September 2017

15

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1 September 2017

11

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1 September 2017

734-748

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https://scigraph.springernature.com/pub.10.1038/nrg3802

1 September 2017

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The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene

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Expression profiling in primates reveals a rapid evolution of human transcription factors

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21 January 2018

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Evolutionary significance of gene expression divergence

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The evolution of gene expression levels in mammalian organs

21 January 2018

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Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss

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Evolution of the correlation between expression divergence and protein divergence in mammals

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MicroRNA-driven developmental remodeling in the brain distinguishes humans from other primates

21 January 2018

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A scan for positively selected genes in the genomes of humans and chimpanzees

21 January 2018

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Cellular source and mechanisms of high transcriptome complexity in the mammalian testis

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Origins, evolution, and phenotypic impact of new genes.

21 January 2018

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RNA-based gene duplication: mechanistic and evolutionary insights

21 January 2018

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Evolution of neuronal and endothelial transcriptomes in primates

21 January 2018

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Tissue-specific expression and regulation of sexually dimorphic genes in mice

21 January 2018

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An evolutionarily conserved sexual signature in the primate brain

21 January 2018

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Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes

21 January 2018

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Origins and functional evolution of Y chromosomes across mammals

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Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators

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Mechanisms and evolutionary patterns of mammalian and avian dosage compensation

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Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation

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21 January 2018

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Meiotic sex chromosome inactivation

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The mouse X chromosome is enriched for multicopy testis genes showing postmeiotic expression

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Bmp4 and Morphological Variation of Beaks in Darwin's Finches

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Developmental basis of phallus reduction during bird evolution

21 January 2018

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The developmental role of Agouti in color pattern evolution.

21 January 2018

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A molecular basis for classic blond hair color in Europeans

21 January 2018

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Optimization of gene expression by natural selection

21 January 2018

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A selection index for gene expression evolution and its application to the divergence between humans and chimpanzees

21 January 2018

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Modeling gene expression evolution with an extended Ornstein-Uhlenbeck process accounting for within-species variation

21 January 2018

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Gene regulation in primates evolves under tissue-specific selection pressures

21 January 2018

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Phylogenetic Comparative Analysis: A Modeling Approach for Adaptive Evolution

21 January 2018

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Genomic signatures of diet-related shifts during human origins

21 January 2018

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Prefrontal white matter volume is disproportionately larger in humans than in other primates

21 January 2018

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Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution

21 January 2018

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GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates.

21 January 2018

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Human-specific gain of function in a developmental enhancer

21 January 2018

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21 January 2018

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Primate transcript and protein expression levels evolve under compensatory selection pressures

21 January 2018

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RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

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Iterative signature algorithm for the analysis of large-scale gene expression data

21 January 2018

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Comparative modular analysis of gene expression in vertebrate organs

21 January 2018

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Conservation and evolution of gene coexpression networks in human and chimpanzee brains

21 January 2018

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Human-specific transcriptional networks in the brain

21 January 2018

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A gene-coexpression network for global discovery of conserved genetic modules

21 January 2018

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Contrasts between adaptive coding and noncoding changes during human evolution

21 January 2018

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Cis and trans effects of human genomic variants on gene expression.

21 January 2018

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Ancient and recent positive selection transformed opioid cis-regulation in humans

21 January 2018

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Rapidly evolving human promoter regions.

21 January 2018

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Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence

21 January 2018

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Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents

21 January 2018

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Selective constraints in experimentally defined primate regulatory regions.

21 January 2018

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Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

21 January 2018

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Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages

21 January 2018

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Dynamics of DNA methylation in recent human and great ape evolution

21 January 2018

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A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues.

21 January 2018

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Human-specific histone methylation signatures at transcription start sites in prefrontal neurons

21 January 2018

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Gene expression differences among primates are associated with changes in a histone epigenetic modification

21 January 2018

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MicroRNA expression and regulation in human, chimpanzee, and macaque brains

21 January 2018

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MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain

21 January 2018

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Evolution of the human-specific microRNA miR-941.

21 January 2018

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Circular RNAs are a large class of animal RNAs with regulatory potency

21 January 2018

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Natural RNA circles function as efficient microRNA sponges

21 January 2018

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Transcriptional neoteny in the human brain

21 January 2018

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Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis

21 January 2018

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Entering the era of single-cell transcriptomics in biology and medicine

21 January 2018

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The functional consequences of variation in transcription factor binding.

21 January 2018

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Architecture of the human regulatory network derived from ENCODE data

21 January 2018

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

21 January 2018

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Quantitative monitoring of gene expression patterns with a complementary DNA microarray

21 January 2018

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Microarrays, deep sequencing and the true measure of the transcriptome

21 January 2018

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Functionality of intergenic transcription: an evolutionary comparison

21 January 2018

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Using DNA microarrays to study gene expression in closely related species.

21 January 2018

1 reference

Elevated gene expression levels distinguish human from non-human primate brains

21 January 2018

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Estimating accuracy of RNA-Seq and microarrays with proteomics

21 January 2018

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Computational methods for transcriptome annotation and quantification using RNA-seq

21 January 2018

1 reference

Comparative RNA sequencing reveals substantial genetic variation in endangered primates

21 January 2018

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Transcription factors are targeted by differentially expressed miRNAs in primates

21 January 2018

1 reference

Evolutionary and ontogenetic changes in RNA editing in human, chimpanzee, and macaque brains

21 January 2018

1 reference

Conserved microRNA editing in mammalian evolution, development and disease

21 January 2018

1 reference

Evolution of alternative splicing in primate brain transcriptomes

21 January 2018

1 reference

Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brain

21 January 2018

1 reference

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

21 January 2018

1 reference

21 January 2018

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The evolutionary landscape of alternative splicing in vertebrate species

21 January 2018

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Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing

21 January 2018

1 reference

Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control

31 March 2020

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Alternative splicing of conserved exons is frequently species-specific in human and mouse

31 March 2020

1 reference

SEX CHROMOSOMES AND THE EVOLUTION OF SEXUAL DIMORPHISM.

31 March 2020

1 reference

STABILIZING SELECTION AND THE COMPARATIVE ANALYSIS OF ADAPTATION.

31 March 2020

1 reference

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NRG3802

1 reference

PubMed ID

25297727

Dimensions Publication ID

1 September 2017

0 references

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PubMed ID

25297727