(Q38313315)

2 September 2017

Mapping the fine structure of a eukaryotic promoter input-output function (English)

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2 September 2017

Arun S Rajkumar

1

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Sebastian Maerkl

object named as

Sebastian J Maerkl

series ordinal

3

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author name string

Nicolas Dénervaud

series ordinal

2

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PubMed ID

23955598

2 September 2017

language of work or name

English

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publication date

18 August 2013

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2 September 2017

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2 September 2017

45

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2 September 2017

10

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2 September 2017

1207-1215

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https://scigraph.springernature.com/pub.10.1038/ng.2729

2 September 2017

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cites work

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Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters

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Massively parallel functional dissection of mammalian enhancers in vivo

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Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay

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Differential binding of the related transcription factors Pho4 and Cbf1 can tune the sensitivity of promoters to different levels of an induction signal.

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Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

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Extensive low-affinity transcriptional interactions in the yeast genome

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A synthetic biology framework for programming eukaryotic transcription functions.

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Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast

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Transcription factors vs nucleosomes: regulation of the PHO5 promoter in yeast

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A systems approach to measuring the binding energy landscapes of transcription factors

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The phosphatase system in Saccharomyces cerevisiae

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New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis

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The homeodomain protein Pho2 and the basic-helix-loop-helix protein Pho4 bind DNA cooperatively at the yeast PHO5 promoter

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Rapid synthesis of defined eukaryotic promoter libraries

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A high-resolution atlas of nucleosome occupancy in yeast

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Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition

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Experimental determination of the evolvability of a transcription factor

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TATA is a modular component of synthetic promoters

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Explicit equilibrium modeling of transcription-factor binding and gene regulation.

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Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4.

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Partially phosphorylated Pho4 activates transcription of a subset of phosphate-responsive genes

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Incorporating nucleosomes into thermodynamic models of transcription regulation

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Flexible promoter architecture requirements for coactivator recruitment

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Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene.

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A quantitative model of transcription factor-activated gene expression

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An improved map of conserved regulatory sites for Saccharomyces cerevisiae

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12 December 2020

Chromatin decouples promoter threshold from dynamic range

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12 December 2020

Phosphate transport and sensing in Saccharomyces cerevisiae

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12 December 2020

Organizational constraints on Ste12 cis-elements for a pheromone response in Saccharomyces cerevisiae

1 reference

12 December 2020

Single amino acid substitutions alter helix-loop-helix protein specificity for bases flanking the core CANNTG motif

1 reference

12 December 2020

A nucleosome precludes binding of the transcription factor Pho4 in vivo to a critical target site in the PHO5 promoter

1 reference

12 December 2020

Cooperative Pho2-Pho4 interactions at the PHO5 promoter are critical for binding of Pho4 to UASp1 and for efficient transactivation by Pho4 at UASp2.

1 reference

12 December 2020

Identifiers

DOI

10.1038/NG.2729

1 reference

PubMed ID

23955598

Dimensions Publication ID

2 September 2017

0 references

1 reference

PubMed ID

23955598