(Q38434459)

3 September 2017

A large-scale benchmark of gene prioritization methods (English)

1 reference

3 September 2017

1 reference

2

Erik L L Sonnhammer

1 reference

3 September 2017

Dimitri Guala

1

1 reference

3 September 2017

language of work or name

English

0 references

publication date

21 April 2017

1 reference

3 September 2017

1 reference

3 September 2017

7

1 reference

3 September 2017

46598

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Creative Commons Attribution 4.0 International

3 September 2017

start time

21 April 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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1 reference

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Pathway-Dependent Effectiveness of Network Algorithms for Gene Prioritization

6 September 2017

1 reference

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Network-based Phenome-Genome Association Prediction by Bi-Random Walk

6 September 2017

1 reference

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STRING v10: protein-protein interaction networks, integrated over the tree of life

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Computational approaches for human disease gene prediction and ranking

6 September 2017

1 reference

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FunCoup 3.0: database of genome-wide functional coupling networks

6 September 2017

1 reference

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Chapter 15: disease gene prioritization

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Disease gene identification by random walk on multigraphs merging heterogeneous genomic and phenotype data

6 September 2017

1 reference

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Exploiting protein-protein interaction networks for genome-wide disease-gene prioritization

6 September 2017

1 reference

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Computational tools for prioritizing candidate genes: boosting disease gene discovery

6 September 2017

1 reference

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Recent approaches to the prioritization of candidate disease genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Prioritizing disease candidate genes by a gene interconnectedness-based approach

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Comparative interactomics with Funcoup 2.0.

6 September 2017

1 reference

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Ensembl BioMarts: a hub for data retrieval across taxonomic space

6 September 2017

1 reference

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PINTA: a web server for network-based gene prioritization from expression data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Prioritizing candidate disease genes by network-based boosting of genome-wide association data.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

A guide to web tools to prioritize candidate genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Associating genes and protein complexes with disease via network propagation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Network-based Identification of novel cancer genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Global networks of functional coupling in eukaryotes from comprehensive data integration

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Disease candidate gene identification and prioritization using protein interaction networks

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

ENDEAVOUR update: a web resource for gene prioritization in multiple species

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Walking the interactome for prioritization of candidate disease genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Gene ontology: tool for the unification of biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Disease gene prioritization using network and feature

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Prediction and Validation of Disease Genes Using HeteSim Scores

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

MaxLink: network-based prioritization of genes tightly linked to a disease seed set.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

Neighbor-favoring weight reinforcement to improve random walk-based disease gene prioritization

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

RESQUE: network reduction using semi-Markov random walk scores for efficient querying of biological networks

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5399445

The use of the area under the ROC curve in the evaluation of machine learning algorithms

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP46598

On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP46598

Web Tools for the Prioritization of Candidate Disease Genes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP46598

An unbiased evaluation of gene prioritization tools

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28429739

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP46598

1 reference

Dimensions Publication ID

3 September 2017

0 references

1 reference

3 September 2017

PubMed publication ID

28429739

1 reference