(Q38466838)

3 September 2017

Taxonomic binning of metagenome samples generated by next-generation sequencing technologies (English)

1 reference

3 September 2017

Alice Carolyn McHardy

series ordinal

2

object named as

Alice C McHardy

1 reference

3 September 2017

Johannes Dröge

1

1 reference

3 September 2017

31 July 2012

1 reference

Briefings in Bioinformatics

3 September 2017

1 reference

3 September 2017

13

1 reference

3 September 2017

646-655

1 reference

3 September 2017

6

1 reference

PubMed ID

22851513

describes a project that uses

3 September 2017

massive parallel sequencing

1 reference

based on heuristic

inferred from title

cites work

Metagenomic analyses: past and future trends

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

A bioinformatician's guide to metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Environmental genome shotgun sequencing of the Sargasso Sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Comparative metagenomics of microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Symbiosis insights through metagenomic analysis of a microbial consortium

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

An insect herbivore microbiome with high plant biomass-degrading capacity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Microbial community structure and its functional implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

The impact of next-generation sequencing technology on genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

A window into third-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Database resources of the National Center for Biotechnology Information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Assembly algorithms for next-generation sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Bambus 2: scaffolding metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Meta-IDBA: a de Novo assembler for metagenomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Genovo: de novo assembly for metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

IMG/M: the integrated metagenome data management and comparative analysis system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Community structure and metabolism through reconstruction of microbial genomes from the environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Taxonomic metagenome sequence assignment with structured output models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

MetaABC--an integrated metagenomics platform for data adjustment, binning and clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

NBC: the Naive Bayes Classification tool webserver for taxonomic classification of metagenomic reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Accurate phylogenetic classification of variable-length DNA fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

A human gut microbial gene catalogue established by metagenomic sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

A catalog of reference genomes from the human microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

BLAST+: architecture and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

HMMER web server: interactive sequence similarity searching

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Integrative analysis of environmental sequences using MEGAN4

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Dinucleotide relative abundance extremes: a genomic signature

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Genomic signature: characterization and classification of species assessed by chaos game representation of sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

One bacterial cell, one complete genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Accurate determination of microbial diversity from 454 pyrosequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

Genome landscapes and bacteriophage codon usage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS031

21 January 2018

Identifiers

DOI

10.1093/BIB/BBS031

1 reference

3 September 2017

journals/bib/DrogeM12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

22851513