(Q39383513)

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A combination of gene expression ranking and co-expression network analysis increases discovery rate in large-scale mutant screens for novel Arabidopsis thaliana abiotic stress genes.

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22 February 2020

A combination of gene expression ranking and co-expression network analysis increases discovery rate in large-scale mutant screens for novel Arabidopsis thaliana abiotic stress genes (English)

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22 February 2020

Arabidopsis thaliana

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Matthew A Hannah

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22 February 2020

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22 February 2020

Esti Yeger-Lotem

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22 February 2020

Vered Chalifa-Caspi

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22 February 2020

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22 February 2020

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Vanessa Ransbotyn

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22 February 2020

Tania Acuna

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22 February 2020

Christoph Verduyn

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22 February 2020

Michal Gordon

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22 February 2020

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5 November 2014

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22 February 2020

Plant Biotechnology Journal

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22 February 2020

13

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22 February 2020

4

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22 February 2020

501-513

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22 February 2020

Genome-wide insertional mutagenesis of Arabidopsis thaliana

1 reference

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21 January 2018

The clock protein CCA1 and the bZIP transcription factor HY5 physically interact to regulate gene expression in Arabidopsis.

1 reference

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Approaches for extracting practical information from gene co-expression networks in plant biology

1 reference

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RD20, a stress-inducible caleosin, participates in stomatal control, transpiration and drought tolerance in Arabidopsis thaliana

1 reference

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Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions

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Functional network construction in Arabidopsis using rule-based machine learning on large-scale data sets

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Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks

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Unique drought resistance functions of the highly ABA-induced clade A protein phosphatase 2Cs.

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Phenotyping of abiotic responses and hormone treatments in Arabidopsis.

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Systematic identification of cell-wall related genes in Populus based on analysis of functional modules in co-expression network

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Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis

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A large-scale genetic screen in Arabidopsis to identify genes involved in pollen exine production

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Mutations in AtPS1 (Arabidopsis thaliana parallel spindle 1) lead to the production of diploid pollen grains

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Evolutionary and comparative analysis of MYB and bHLH plant transcription factors

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The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks

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Reverse engineering: a key component of systems biology to unravel global abiotic stress cross-talk

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Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator

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The impact of multifunctional genes on "guilt by association" analysis

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An abscisic acid-induced protein, HVA22, inhibits gibberellin-mediated programmed cell death in cereal aleurone cells

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21 January 2018

Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1

1 reference

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21 January 2018

Systematic identification of functional plant modules through the integration of complementary data sources

1 reference

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21 January 2018

Abscisic acid signal off the STARting block

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12274

21 January 2018

STRESS RESPONSE SUPPRESSOR1 and STRESS RESPONSE SUPPRESSOR2, two DEAD-box RNA helicases that attenuate Arabidopsis responses to multiple abiotic stresses

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12274

21 January 2018

Functional-genomics-based identification of genes that regulate Arabidopsis responses to multiple abiotic stresses

1 reference

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21 January 2018

Forward genetic analysis of the circadian clock separates the multiple functions of ZEITLUPE.

1 reference

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21 January 2018

Assessment of effectiveness of the network-guided genetic screen

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12274

21 January 2018

Roles of CAMTA transcription factors and salicylic acid in configuring the low-temperature transcriptome and freezing tolerance of Arabidopsis

1 reference

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21 January 2018

In Vivo Inhibition of Seed Development and Reserve Protein Accumulation in Recombinants of Abscisic Acid Biosynthesis and Responsiveness Mutants in Arabidopsis thaliana.

1 reference

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21 January 2018

Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements

1 reference

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21 January 2018

Interaction of Arabidopsis DET1 with CCA1 and LHY in mediating transcriptional repression in the plant circadian clock.

1 reference

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21 January 2018

Coexpression analysis of human genes across many microarray data sets

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Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

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21 January 2018

Genetic dissection of the biotic stress response using a genome-scale gene network for rice.

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12274

21 January 2018

Gene-sharing networks reveal organizing principles of transcriptomes in Arabidopsis and other multicellular organisms.

1 reference

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21 January 2018

Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis.

1 reference

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21 January 2018

Chloroplast 2010: a database for large-scale phenotypic screening of Arabidopsis mutants.

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21 January 2018

Machine learning-based differential network analysis: a study of stress-responsive transcriptomes in Arabidopsis.

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Arabidopsis gene co-expression network and its functional modules.

1 reference

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Could heat shock transcription factors function as hydrogen peroxide sensors in plants?

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Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm

1 reference

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Organization and expression of two Arabidopsis DREB2 genes encoding DRE-binding proteins involved in dehydration- and high-salinity-responsive gene expression

1 reference

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21 January 2018

NAC transcription factors in plant abiotic stress responses

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Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis.

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A general co-expression network-based approach to gene expression analysis: comparison and applications

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Investigating the role of plant heat shock proteins during oxidative stress

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Overexpression of the Ethylene-Responsive Factor Gene BrERF4 from Brassica rapa Increases Tolerance to Salt and Drought in Arabidopsis Plants

1 reference

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Transcriptional regulation in plants: the importance of combinatorial control

1 reference

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Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit

1 reference

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A gene-coexpression network for global discovery of conserved genetic modules

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Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana

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A computational systems biology study for understanding salt tolerance mechanism in rice.

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Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks

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1 reference

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Identifiers

10.1111/PBI.12274

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25370817%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25370817%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

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