(Q40140840)

13 June 2018

title

In vivo analysis of the viable microbiota and Helicobacter pylori transcriptome in gastric infection and early stages of carcinogenesis (English)

1 reference

13 June 2018

main subject

Helicobacter pylori

object named as

Helicobacter pylori

1 reference

1

1 reference

17 September 2017

9

1 reference

17 September 2017

11

Åsa Sjöling

1 reference

13 June 2018

5

Intawat Nookaew

1 reference

PMCID

5607399

13 June 2018

Johan Bengtsson-Palme

2

object named as

Johan Bengtsson-Palme

1 reference

13 June 2018

David Y. Graham

8

object named as

David Y Graham

1 reference

13 June 2018

10

Samuel B Lundin

1 reference

13 June 2018

author name string

Oscar Hsin-Fu Liu

3

1 reference

13 June 2018

Reyna Victoria Palacios Gonzales

4

1 reference

13 June 2018

Linda Rabeneck

6

1 reference

13 June 2018

Lawrence Paszat

7

1 reference

13 June 2018

language of work or name

English

0 references

publication date

20 September 2017

1 reference

13 June 2018

published in

Infection and Immunity

1 reference

13 June 2018

volume

85

1 reference

13 June 2018

issue

10

1 reference

13 June 2018

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/5607399

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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1 reference

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Helicobacter pylori, Cancer, and the Gastric Microbiota

17 June 2018

1 reference

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Near-optimal probabilistic RNA-seq quantification

17 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Analysis of Gastric Microbiota by Pyrosequencing: Minor Role of Bacteria Other Than Helicobacter pylori in the Gastric Carcinogenesis

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics

17 June 2018

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Different gastric microbiota compositions in two human populations with high and low gastric cancer risk in Colombia

17 June 2018

1 reference

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17 June 2018

1 reference

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17 June 2018

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17 June 2018

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17 June 2018

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limma powers differential expression analyses for RNA-sequencing and microarray studies

17 June 2018

1 reference

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17 June 2018

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17 June 2018

1 reference

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Stomach microbiota composition varies between patients with non-atrophic gastritis and patients with intestinal type of gastric cancer

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

DNA transfer in the gastric pathogen Helicobacter pylori

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Microbiota in the stomach: new insights

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Pathology of gastric cancer and its precursor lesions

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Microbiological survey of the human gastric ecosystem using culturing and pyrosequencing methods

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Epidemiology of Helicobacter pylori infection in six Latin American countries (SWOG Trial S0701)

17 June 2018

1 reference

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17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Expression of colonization factor CS5 of enterotoxigenic Escherichia coli (ETEC) is enhanced in vivo and by the bile component Na glycocholate hydrate

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

The gastric precancerous cascade

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Helicobacter pylori AlpA and AlpB bind host laminin and influence gastric inflammation in gerbils

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Quality control and preprocessing of metagenomic datasets

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Structure of the human gastric bacterial community in relation to Helicobacter pylori status

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Search and clustering orders of magnitude faster than BLAST

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Gene expression profiling of metaplastic lineages identifies CDH17 as a prognostic marker in early stage gastric cancer

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

The primary transcriptome of the major human pathogen Helicobacter pylori

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Bacterial microbiota profiling in gastritis without Helicobacter pylori infection or non-steroidal anti-inflammatory drug use

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Molecular characterization of the stomach microbiota in patients with gastric cancer and in controls

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Comparative analysis of human gut microbiota by barcoded pyrosequencing

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Non-pylori Helicobacteraceae in the upper digestive tract of asymptomatic Venezuelan subjects: detection of Helicobacter cetorum-like and Candidatus Wolinella africanus-like DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Digestive tract microbiota in healthy volunteers.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Characterization of the ArsRS regulon of Helicobacter pylori, involved in acid adaptation

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Molecular analysis of the bacterial microbiota in the human stomach

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Intracellular and Interstitial Expression ofHelicobacter pyloriVirulence Genes in Gastric Precancerous Intestinal Metaplasia and Adenocarcinoma

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Helicobacter pylori infection and the development of gastric cancer

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Quantitative detection of Helicobacter pylori gene expression in vivo and relationship to gastric pathology

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Comparative genomics of Helicobacter pylori: analysis of the outer membrane protein families

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Specific antibodies in sera and gastric aspirates of symptomatic and asymptomatic Helicobacter pylori-infected subjects

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Alpha 6 beta 4 integrin and newly deposited laminin-1 and laminin-5 form the adhesion mechanism of gastric carcinoma. Continuous expression of laminins but not that of collagen VII is preserved in invasive parts of the carcinomas: implications for a

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Differential expression of laminin chains and their integrin receptors in human gastric mucosa

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Microbial colonization of tumors in relation to the upper gastrointestinal tract in patients with gastric carcinoma

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Re-annotation of the genome sequence of Helicobacter pylori 26695.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Presence of high numbers of transcriptionally active Helicobacter pylori in vomitus from Bangladeshi patients suffering from acute gastroenteritis

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5607399

Re-annotation of the genome sequence of Helicobacter pylori 26695.

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28694295

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A fast and symmetric DUST implementation to mask low-complexity DNA sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28694295

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/IAI.00031-17

1 reference

13 June 2018

PMCID

5607399

1 reference

13 June 2018

PubMed ID

28694295

1 reference

13 June 2018