(Q40496536)

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Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways

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scholarly article

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Europe PubMed Central

PubMed publication ID

21 September 2017

Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways (English)

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Europe PubMed Central

PubMed publication ID

21 September 2017

5

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PubMed publication ID

21 September 2017

object named as

Jerome Verdier

10

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object named as

Julia Buitink

12

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Olivier Leprince

object named as

Olivier Leprince

11

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Nicholas J Provart

9

object named as

Nicholas J Provart

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Europe PubMed Central

PubMed publication ID

21 September 2017

author name string

Karima Righetti

1

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Europe PubMed Central

PubMed publication ID

21 September 2017

Joseph Ly Vu

2

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Europe PubMed Central

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21 September 2017

Sandra Pelletier

3

1 reference

Europe PubMed Central

PubMed publication ID

21 September 2017

Benoit Ly Vu

4

1 reference

Europe PubMed Central

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21 September 2017

David Lalanne

6

1 reference

Europe PubMed Central

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21 September 2017

Asher Pasha

7

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21 September 2017

Rohan V Patel

8

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21 September 2017

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publication date

26 September 2015

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PubMed publication ID

21 September 2017

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Europe PubMed Central

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21 September 2017

27

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Europe PubMed Central

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21 September 2017

10

1 reference

Europe PubMed Central

PubMed publication ID

21 September 2017

2692-2708

1 reference

Europe PubMed Central

PubMed publication ID

21 September 2017

Indole Glucosinolate Biosynthesis Limits Phenylpropanoid Accumulation in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Identification of a molecular dialogue between developing seeds of Medicago truncatula and seedborne xanthomonads.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Discovery of core biotic stress responsive genes in Arabidopsis by weighted gene co-expression network analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Genome-wide association mapping and biochemical markers reveal that seed ageing and longevity are intricately affected by genetic background and developmental and environmental conditions in barley.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency.

1 reference

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14 September 2018

Discovering functional modules across diverse maize transcriptomes using COB, the Co-expression Browser.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

LEA polypeptide profiling of recalcitrant and orthodox legume seeds reveals ABI3-regulated LEA protein abundance linked to desiccation tolerance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

A regulatory network-based approach dissects late maturation processes related to the acquisition of desiccation tolerance and longevity of Medicago truncatula seeds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

HSPRO acts via SnRK1-mediated signaling in the regulation of Nicotiana attenuata seedling growth promoted by Piriformospora indica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Natural variation for seed longevity and seed dormancy are negatively correlated in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

BAR expressolog identification: expression profile similarity ranking of homologous genes in plant species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Repression by an auxin/indole acetic acid protein connects auxin signaling with heat shock factor-mediated seed longevity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

The intrinsically disordered late embryogenesis abundant protein LEA18 from Arabidopsis thaliana modulates membrane stability through binding and folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

The Arabidopsis P450 protein CYP82C2 modulates jasmonate-induced root growth inhibition, defense gene expression and indole glucosinolate biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

The Medicago truncatula gene expression atlas web server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

The MtSNF4b subunit of the sucrose non-fermenting-related kinase complex connects after-ripening and constitutive defense responses in seeds of Medicago truncatula.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Natural modifiers of seed longevity in the Arabidopsis mutants abscisic acid insensitive3-5 (abi3-5) and leafy cotyledon1-3 (lec1-3).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

RiceArrayNet: a database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

The HaDREB2 transcription factor enhances basal thermotolerance and longevity of seeds through functional interaction with HaHSFA9.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Ecological correlates of ex situ seed longevity: a comparative study on 195 species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Geometric interpretation of gene coexpression network analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Systems approaches to identifying gene regulatory networks in plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Roles of Arabidopsis WRKY3 and WRKY4 transcription factors in plant responses to pathogens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

AtNFXL1, an Arabidopsis homologue of the human transcription factor NF-X1, functions as a negative regulator of the trichothecene phytotoxin-induced defense response.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Basal resistance against Pseudomonas syringae in Arabidopsis involves WRKY53 and a protein with homology to a nematode resistance protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

A central integrator of transcription networks in plant stress and energy signalling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

AKINbetagamma contributes to SnRK1 heterotrimeric complexes and interacts with two proteins implicated in plant pathogen resistance through its KIS/GBD sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Improved resistance to controlled deterioration in transgenic seeds.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

SNF1-related kinases allow plants to tolerate herbivory by allocating carbon to roots

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

A general framework for weighted gene co-expression network analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

From single genes to co-expression networks: extracting knowledge from barley functional genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Engineering of plant natural product pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

A gene expression map of Arabidopsis thaliana development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Vitamin E is essential for seed longevity and for preventing lipid peroxidation during germination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

CYP83B1, a cytochrome P450 at the metabolic branch point in auxin and indole glucosinolate biosynthesis in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4682330

14 September 2018

Genetic analysis of seed-soluble oligosaccharides in relation to seed storability of Arabidopsis.

1 reference

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Emergence of Scaling in Random Networks

1 reference

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14 September 2018

A novel cysteine-rich sequence-specific DNA-binding protein interacts with the conserved X-box motif of the human major histocompatibility complex class II genes via a repeated Cys-His domain and functions as a transcriptional repressor

1 reference

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14 September 2018

Acquisition of Desiccation Tolerance and Longevity in Seeds of Arabidopsis thaliana (A Comparative Study Using Abscisic Acid-Insensitive abi3 Mutants)

1 reference

https://pubmed.ncbi.nlm.nih.gov/26410298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The regulatory gamma subunit SNF4b of the sucrose non-fermenting-related kinase complex is involved in longevity and stachyose accumulation during maturation of Medicago truncatula seeds

1 reference

https://pubmed.ncbi.nlm.nih.gov/26410298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Is There a Role for Oligosaccharides in Seed Longevity? An Assessment of Intracellular Glass Stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/26410298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Combined Proteome and Transcriptome Analysis of DevelopingMedicago truncatulaSeeds

1 reference

https://pubmed.ncbi.nlm.nih.gov/26410298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The AtNFXL1 gene encodes a NF-X1 type zinc finger protein required for growth under salt stress

1 reference

https://pubmed.ncbi.nlm.nih.gov/26410298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influence of the testa on seed dormancy, germination, and longevity in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26410298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens

1 reference

https://pubmed.ncbi.nlm.nih.gov/26410298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Glutathione half-cell reduction potential: A universal stress marker and modulator of programmed cell death?

1 reference

https://pubmed.ncbi.nlm.nih.gov/26410298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Temporal profiling of the heat-stable proteome during late maturation of Medicago truncatula seeds identifies a restricted subset of late embryogenesis abundant proteins associated with longevity

1 reference

https://pubmed.ncbi.nlm.nih.gov/26410298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pectin methylesterase is induced in Arabidopsis upon infection and is necessary for a successful colonization by necrotrophic pathogens

1 reference

https://pubmed.ncbi.nlm.nih.gov/26410298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1105/TPC.15.00632

1 reference

Europe PubMed Central

PubMed publication ID

21 September 2017

PMC publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

21 September 2017

ResearchGate publication ID

0 references

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