(Q40577548)

English

Computer simulation of the chemical catalysis of DNA polymerases: discriminating between alternative nucleotide insertion mechanisms for T7 DNA polymerase

scientific article published on July 2003

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scholarly article

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Europe PubMed Central

PubMed publication ID

21 September 2017

Computer simulation of the chemical catalysis of DNA polymerases: discriminating between alternative nucleotide insertion mechanisms for T7 DNA polymerase (English)

1 reference

Europe PubMed Central

PubMed publication ID

21 September 2017

computer simulation

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based on heuristic

inferred from title

3

object named as

Arieh Warshel

1 reference

Europe PubMed Central

PubMed publication ID

21 September 2017

author name string

Jan Florián

1

1 reference

Europe PubMed Central

PubMed publication ID

21 September 2017

Myron F Goodman

2

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Europe PubMed Central

PubMed publication ID

21 September 2017

language of work or name

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publication date

1 July 2003

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Europe PubMed Central

PubMed publication ID

21 September 2017

Journal of the American Chemical Society

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Europe PubMed Central

PubMed publication ID

21 September 2017

125

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Europe PubMed Central

PubMed publication ID

21 September 2017

27

1 reference

Europe PubMed Central

PubMed publication ID

21 September 2017

8163-8177

1 reference

Europe PubMed Central

PubMed publication ID

21 September 2017

Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

1 reference

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Computer simulations of enzyme catalysis: finding out what has been optimized by evolution.

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Insight into the catalytic mechanism of DNA polymerase beta: structures of intermediate complexes

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Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

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Electrostatic origin of the catalytic power of enzymes and the role of preorganized active sites

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Energetics of enzyme catalysis

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Solvation, reorganization energy, and biological catalysis

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Substrate-assisted catalysis as a mechanism for GTP hydrolysis of p21ras and other GTP-binding proteins.

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DNA polymerases: structural diversity and common mechanisms

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The depth of chemical time and the power of enzymes as catalysts.

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Comparison of simple potential functions for simulating liquid water

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Dynamics of biochemical and biophysical reactions: insight from computer simulations

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Evolution of enzyme function and the development of catalytic efficiency

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Simulation of enzyme reactions using valence bond force fields and other hybrid quantum/classical approaches

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Calculation of free‐energy differences from computer simulations of initial and final states

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A reexamination of the nucleotide incorporation fidelity of DNA polymerases

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Thermodynamics of proton dissociation in dilute aqueous solution. V. An entropy titration study of adenosine, pentoses, hexoses, and related compounds

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An open and closed case for all polymerases.

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How does GAP catalyze the GTPase reaction of Ras? A computer simulation study

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Polymerase structures and mechanism.

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Computer simulation studies of the fidelity of DNA polymerases

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The mechanism of action of T7 DNA polymerase

1 reference

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Identifiers

10.1021/JA028997O

1 reference

Europe PubMed Central

PubMed publication ID

21 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

21 September 2017

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