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Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
scientific article published on 27 June 2017
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
5487215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28653622%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
title
Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
5487215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28653622%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
main subject
DNA methylation
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author
Sebastian Pott
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
5487215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28653622%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
author name string
Sebastian Pott
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
5487215
retrieved
25 September 2017
language of work or name
English
0 references
publication date
27 June 2017
1 reference
stated in
Europe PubMed Central
PMC publication ID
5487215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28653622%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
published in
eLife
1 reference
stated in
Europe PubMed Central
PMC publication ID
5487215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28653622%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
volume
6
1 reference
stated in
Europe PubMed Central
PMC publication ID
5487215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28653622%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
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ggplot2
2 references
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PubMed Central
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10 June 2022
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=5487215
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CZ Software Mentions: A large dataset of software mentions in the biomedical literature
cites work
Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5487215
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26 September 2017
Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples.
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26 September 2017
Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5487215
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26 September 2017
Single-cell chromatin accessibility reveals principles of regulatory variation
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PubMed Central
reference URL
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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
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PubMed Central
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Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5487215
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Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics
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PubMed Central
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26 September 2017
ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide
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Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
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PubMed Central
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Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer
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Single-cell nucleosome mapping reveals the molecular basis of gene expression heterogeneity
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PubMed Central
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The UCSC Genome Browser database: 2014 update
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PubMed Central
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An integrated encyclopedia of DNA elements in the human genome
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PubMed Central
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5487215
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5487215
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PubMed Central
reference URL
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19 August 2018
DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5487215
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1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5487215
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19 August 2018
Methylation-sensitive single-molecule analysis of chromatin structure.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5487215
retrieved
19 August 2018
Identifiers
DOI
10.7554/ELIFE.23203
1 reference
stated in
Europe PubMed Central
PMC publication ID
5487215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28653622%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
PMC publication ID
5487215
1 reference
stated in
Europe PubMed Central
PMC publication ID
5487215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28653622%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
PubMed publication ID
28653622
1 reference
stated in
Europe PubMed Central
PMC publication ID
5487215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28653622%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
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