(Q41650098)

6 October 2017

title

Assessing approaches for inferring species trees from multi-copy genes (English)

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6 October 2017

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6 October 2017

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J Gordon Burleigh

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6 October 2017

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David Fernández-Baca

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6 October 2017

Ruchi Chaudhary

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6 October 2017

publication date

23 December 2014

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6 October 2017

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6 October 2017

volume

64

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6 October 2017

issue

2

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6 October 2017

page(s)

325-339

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Simultaneous Bayesian gene tree reconstruction and reconciliation analysis

6 October 2017

cites work

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

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Fast local search for unrooted Robinson-Foulds supertrees

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Gene tree parsimony vs uninode coding for phylogenetic reconstruction

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Gene tree discordance, phylogenetic inference and the multispecies coalescent

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Evolutionary trees from DNA sequences: A maximum likelihood approach

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The cobweb of life revealed by genome-scale estimates of horizontal gene transfer

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Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.

21 January 2018

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Reconstruction of ancient molecular phylogeny

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Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution

21 January 2018

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Bayesian inference of species trees from multilocus data

21 January 2018

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Deep genomic-scale analyses of the metazoa reject Coelomata: evidence from single- and multigene families analyzed under a supertree and supermatrix paradigm

21 January 2018

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21 January 2018

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21 January 2018

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Inconsistency of phylogenetic estimates from concatenated data under coalescence

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21 January 2018

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21 January 2018

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A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

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Coalescent methods for estimating phylogenetic trees

21 January 2018

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Inferring phylogeny despite incomplete lineage sorting

21 January 2018

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Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom.

21 January 2018

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Phylogenetic MCMC algorithms are misleading on mixtures of trees.

21 January 2018

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Resolution of ray-finned fish phylogeny and timing of diversification

21 January 2018

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Reconciling gene and genome duplication events: using multiple nuclear gene families to infer the phylogeny of the aquatic plant family Pontederiaceae.

21 January 2018

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From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem

21 January 2018

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A bias in ML estimates of branch lengths in the presence of multiple signals.

21 January 2018

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TOPD/FMTS: a new software to compare phylogenetic trees.

21 January 2018

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A Bayesian approach for fast and accurate gene tree reconstruction

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

Unified modeling of gene duplication, loss, and coalescence using a locus tree

21 January 2018

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Inferring angiosperm phylogeny from EST data with widespread gene duplication

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

Inferring species trees from gene trees: a phylogenetic analysis of the Elapidae (Serpentes) based on the amino acid sequences of venom proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

How should species phylogenies be inferred from sequence data?

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

DendroPy: a Python library for phylogenetic computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

A simulation study comparing supertree and combined analysis methods using SMIDGen

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

Consistency properties of species tree inference by minimizing deep coalescences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

The evolution of pharyngognathy: a phylogenetic and functional appraisal of the pharyngeal jaw key innovation in labroid fishes and beyond

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

Algorithms for MDC-based multi-locus phylogeny inference: beyond rooted binary gene trees on single alleles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

From gene trees to species trees II: species tree inference by minimizing deep coalescence events.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

The gene evolution model and computing its associated probabilities

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU128

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYU128

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6 October 2017

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