(Q42172692)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

title

Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

0 references

0 references

1 reference

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

Michael Stat

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

Megan J. Huggett

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

Tina E. Berry

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

Stephen J. Newman

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

Euan Harvey

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

author name string

Rachele Bernasconi

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

Michael Bunce

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

language of work or name

English

0 references

publication date

25 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

page(s)

12240

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

31 March 2020

copyright license

start time

25 September 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

environmental DNA

1 reference

maintained by WikiProject

inferred from title

1 reference

https://scigraph.springernature.com/pub.10.1038/s41598-017-12501-5

0 references

cites work

Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Estimating species richness using environmental DNA.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Please mind the gap - Visual census and cryptic biodiversity assessment at central Red Sea coral reefs

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Fecal metagenomics for the simultaneous assessment of diet, parasites, and population genetics of an understudied primate

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Evaluating a multigene environmental DNA approach for biodiversity assessment

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass--Sequence Relationships with an Innovative Metabarcoding Protocol.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Ocean plankton. Structure and function of the global ocean microbiome

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

From benchtop to desktop: important considerations when designing amplicon sequencing workflows

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Early detection of eukaryotic communities from marine biofilm using high-throughput sequencing: an assessment of different sampling devices

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Accurate multiplexing and filtering for high-throughput amplicon-sequencing

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Environmental DNA for wildlife biology and biodiversity monitoring

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Environmental metabarcodes for insects: in silico PCR reveals potential for taxonomic bias

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Fifty thousand years of Arctic vegetation and megafaunal diet

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Evaluating detection limits of next-generation sequencing for the surveillance and monitoring of international marine pests

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Detection of a diverse marine fish fauna using environmental DNA from seawater samples

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Towards next-generation biodiversity assessment using DNA metabarcoding

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Next-generation sequencing technologies for environmental DNA research

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Targeted enrichment of genomic DNA regions for next-generation sequencing

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Removing noise from pyrosequenced amplicons

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

The campaign to DNA barcode all fishes, FISH-BOL.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

The Impact of Climate Change on the World's Marine Ecosystems

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai'i

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Rebuilding global fisheries.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Functional diversity in coral-dinoflagellate symbiosis

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Species detection using environmental DNA from water samples

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

A global map of human impact on marine ecosystems

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Microbial structuring of marine ecosystems

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

MEGAN analysis of metagenomic data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

The promise of DNA barcoding for taxonomy

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Beringian paleoecology inferred from permafrost-preserved fungal DNA

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Environmental genome shotgun sequencing of the Sargasso Sea

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

SAR11 clade dominates ocean surface bacterioplankton communities.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Fishing down marine food webs

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Repeated genes in eukaryotes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Exploring Symbiodinium diversity and host specificity in Acropora corals from geographical extremes of Western Australia with 454 amplicon pyrosequencing

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5612959

Managing for ocean biodiversity to sustain marine ecosystem services

17 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

REVIEW: The detection of aquatic animal species using environmental DNA - a review of eDNA as a survey tool in ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

Framework for understanding marine ecosystem health

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

The evolutionary history of Symbiodinium and scleractinian hosts—Symbiosis, diversity, and the effect of climate change

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

A comparison of proxy performance in coral biodiversity monitoring

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

A comparison of temperate reef fish assemblages recorded by three underwater stereo-video techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

7 January 2021

Regional-scale benthic monitoring for ecosystem-based fisheries management (EBFM) using an autonomous underwater vehicle (AUV)

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

7 January 2021

The ecology of environmental DNA and implications for conservation genetics

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

7 January 2021

Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

7 January 2021

Age-based demographic assessment of fished stocks of Lethrinus nebulosus in the Gascoyne Bioregion of Western Australia

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

7 January 2021

Particle size distribution and optimal capture of aqueous macrobial eDNA

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

7 January 2021

Bait attraction affects the performance of remote underwater video stations in assessment of demersal fish community structure

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

7 January 2021

Geographic structure and host specificity shape the community composition of symbiotic dinoflagellates in corals from the Northwestern Hawaiian Islands

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12501-5

7 January 2021

10.1038/S41598-017-12501-5

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28947818%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

PubMed publication ID

28947818

1 reference